ViewGene
Locus Name:
GeneID:
Location:

GeneID:4378
TrivialName: PA14_51290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51290
PAO1 Ortholog Locus:PA1008
Sequence Length:474
Protein Length:157
Start: 4557433
Stop: 4557906
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04397.1|AE004533_8 (AE004533) bacterioferritin comigratory protein [Pseudomonas aeruginosa PAO1]
Identities = 157/157 (100%), Positives = 157/157 (100%)
Sequence:
ATGCCGGTCGCAATCGACAAACCCGTACCCGACTTCACCGCCCCCGCAACCAGCGGCAAGGAGGTGACCCTG
TCCGCGCTGAAGGGCAAGCAGGTCGTCCTGTATTTCTACCCGAAGGACAGCACCCCCGGTTGCACCACCGAG
GGCCAGGGCTTCCGCGACCAGTACGCGGCGTTCCAGAAGGCCAATACCGAGGTCTTCGGCATCTCCCGCGAC
GGCCTGAAGTCCCACGAGAACTTCAAGTGCAAACAGGAATTCCCCTTCGAGCTGATCAGCGACAAGGATGAA
GCGGTCTGCCAGCTGTTCGACGTGATCAAGCTGAAGAAGCTCTACGGCAAGGAATACATGGGCGTCGACCGC
AGCACCTTCCTGATCGACAGGGACGGCGTACTGCGCCAGGAGTGGCGCGGCGTGAAGGTGCCCGGGCATGTC
GACGCGGTTCTCGCCGCCGCCCAGGCGCTCAACGGCGCCTGA
Translation:
MPVAIDKPVPDFTAPATSGKEVTLSALKGKQVVLYFYPKDSTPGCTTEGQGFRDQYAAFQKANTEVFGISRD
GLKSHENFKCKQEFPFELISDKDEAVCQLFDVIKLKKLYGKEYMGVDRSTFLIDRDGVLRQEWRGVKVPGHV
DAVLAAAQALNGA*
AnnotationID:4384GeneID:4378
AnnotatorUID: danlee
Modification Date/Time: 2004-05-17 16:04:12
Gene Name:bcp
Confidence Code:2
GeneProduct:bacterioferritin comigratory protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:peroxiredoxin
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1225
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
        CD-Length = 157 residues,  99.4% aligned
        Score =  211 bits (538), Expect = 4e-56






   
Genomic Context:






   
Comment:


















    ReferenceID:8757




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25900




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4378
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6714
                           PA1008_tr
                           translation of PA1008
                           157
                           99.99
                           99.99
                           0
                           821.0
     

     
     
180370
                           gb|AAG04397.1|AE004533_8
                           (AE004533) bacterioferritin comigratory protein [Pseudomonas aeruginosa PAO1]
                           157
                           99.99
                           99.99
                           0
                           821.0
     

     
     
180371
                           gb|AAN66859.1|AE016314_6
                           (AE016778) AhpC/TSA family protein [Pseudomonas putida KT2440]
                           157
                           83.43
                           91.71
                           0
                           692.0
     

     
     
180372
                           gb|AAO57416.1|
                           (AE016870) AhpC/Tsa family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           157
                           77.07
                           86.62
                           0
                           647.0
     

     
     
180373
                           emb|CAD15019.1|
                           (AL646063) PROBABLE BACTERIOFERRITIN COMIGRATORY OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           157
                           69.42
                           80.25
                           3
                           589.0
     

     






      

          
GC ORFID: 47380How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1008Glimmer Score: 

          
Start: 396474Stop: 396001

          
Length: 474


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1008 translation of PA1008Homolog Bit Score 320.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1556 (ORF: BLASTX 258.0), t_PA1008 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGGTCGCAATCGACAAACCCGTACCCGACTTCACCGCCCCCGCAACCAGCGGCAAGGAGGTGACCCTG 
TCCGCGCTGAAGGGCAAGCAGGTCGTCCTGTATTTCTACCCGAAGGACAGCACCCCCGGTTGCACCACCGAG 
GGCCAGGGCTTCCGCGACCAGTACGCGGCGTTCCAGAAGGCCAATACCGAGGTCTTCGGCATCTCCCGCGAC 
GGCCTGAAGTCCCACGAGAACTTCAAGTGCAAACAGGAATTCCCCTTCGAGCTGATCAGCGACAAGGATGAA 
GCGGTCTGCCAGCTGTTCGACGTGATCAAGCTGAAGAAGCTCTACGGCAAGGAATACATGGGCGTCGACCGC 
AGCACCTTCCTGATCGACAGGGACGGCGTACTGCGCCAGGAGTGGCGCGGCGTGAAGGTGCCCGGGCATGTC 
GACGCGGTTCTCGCCGCCGCCCAGGCGCTCAACGGCGCCTGA