ViewGene
Locus Name:
GeneID:
Location:

GeneID:4377
TrivialName: PA14_70080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70080
PAO1 Ortholog Locus:PA5308
Sequence Length:489
Protein Length:162
Start: 6250369
Stop: 6250857
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08693.1|AE004943_9 (AE004943) leucine-responsive regulatory protein [Pseudomonas aeruginosa PAO1]
Identities = 162/162 (100%), Positives = 162/162 (100%)
Sequence:
ATGCGTACCCAGCATCAGAGCAAGCGCGAGCTGGACAAGATCGACCGCAACATCCTCCGCATCCTGCAGGAG
GAAGGTCGCATTTCCTTCACCGAGCTGGGCGAACGCGTCGGCCTCTCGACCACACCCTGCACCGAACGCGTG
CGCCGCCTGGAGCGCGAAGGCCTGATCATGGGCTATCACGCCCGGCTCAATCCGCAGCATCTGAAGGCCAGC
CTGCTGGTGTTCGTCGAGATCAGCCTGGACTACAAGTCCGGCGATACCTTCGAAGAGTTTCGCCGGGCGGTG
CTCAAGCTGCCCCATGTGCTGGAATGCCACCTGGTGTCCGGCCACTTCGACTACCTGGTGAAGGCTCGCATC
TCGGAAATGGCGTCCTACCGCAAGCTGCTCGGCGACATCCTGCTGAAACTGCCGCACGTACGCGAGTCGAAG
AGCTATATCGTCATGGAAGAGGTCAAGGAGTCGCTCGACCTACCGGTTCCGGATTGA
Translation:
MRTQHQSKRELDKIDRNILRILQEEGRISFTELGERVGLSTTPCTERVRRLEREGLIMGYHARLNPQHLKAS
LLVFVEISLDYKSGDTFEEFRRAVLKLPHVLECHLVSGHFDYLVKARISEMASYRKLLGDILLKLPHVRESK
SYIVMEEVKESLDLPVPD*
AnnotationID:4383GeneID:4377
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 13:01:40
Gene Name:lrp
Confidence Code:2
GeneProduct:leucine responsive regulatory protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1522,smart00344,pfam01037
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70836.1|AE016728_5 (AE016793) leucine-responsive regulatory protein [Pseudomonas
           putida KT2440]
          Length = 162

 Score =  303 bits (776), Expect = 3e-82
 Identities = 152/162 (93%), Positives = 158/162 (97%)

>gb|AAO53654.1| (AE016856) leucine-responsive regulatory protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 162

 Score =  300 bits (767), Expect = 3e-81
 Identities = 152/162 (93%), Positives = 157/162 (96%)

>gb|AAM38532.1| (AE012019) leucine responsive regulatory protein [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 159

 Score =  258 bits (659), Expect = 9e-69
 Identities = 131/154 (85%), Positives = 141/154 (91%)






 
Structural Features:
COG1522, Lrp, Transcriptional regulators [Transcription]
CD-Length = 154 residues, 100.0% aligned
Score =  138 bits (349), Expect = 3e-34
Identities = 68/155 (43%), Positives = 104/155 (67%), Gaps = 1/155 (0%)

smart00344, HTH_ASNC, helix_turn_helix ASNC type
CD-Length = 104 residues, 100.0% aligned
Score =  117 bits (296), Expect = 4e-28
Identities = 53/106 (50%), Positives = 72/106 (67%), Gaps = 2/106 (1%)

pfam01037, AsnC_trans_reg, AsnC family. 
CD-Length = 104 residues, 100.0% aligned
Score =  111 bits (278), Expect = 6e-26
Identities = 49/104 (47%), Positives = 71/104 (68%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8755




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25898




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34793




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4377_cdd.html


    		




 
URL:

















    ReferenceID:35706




  
Author/Investigator(s):
        Cubero J, Graham JH.





  
Title:
        The leucine-responsive regulatory protein (lrp) gene for characterization of the relationship among Xanthomonas species.




  
PubMed:
        15023955


MedLine:
        




    
Source:
Int J Syst Evol Microbiol. 2004 Mar;54(Pt 2):429-37.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15023955









           
Homologs By Global Alignment 

           

       



     
Gene ID:4377
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6712
                           PA5308_tr
                           translation of PA5308
                           162
                           99.99
                           99.99
                           0
                           822.0
     

     
     
180290
                           gb|AAG08693.1|AE004943_9
                           (AE004943) leucine-responsive regulatory protein [Pseudomonas aeruginosa PAO1]
                           162
                           99.99
                           99.99
                           0
                           822.0
     

     
     
180291
                           gb|AAN70836.1|AE016728_5
                           (AE016793) leucine-responsive regulatory protein [Pseudomonas putida KT2440]
                           162
                           93.82
                           97.53
                           0
                           776.0
     

     
     
180292
                           gb|AAO53654.1|
                           (AE016856) leucine-responsive regulatory protein [Pseudomonas syringae pv. tomato str. DC3000]
                           162
                           93.82
                           96.91
                           0
                           767.0
     

     
     
180294
                           gb|AAM42919.1|
                           (AE012486) leucine responsive regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           162
                           81.48
                           88.27
                           3
                           650.0
     

     






      

          
GC ORFID: 47379How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5308Glimmer Score: 

          
Start: 5514058Stop: 5514546

          
Length: 489


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5308 translation of PA5308Homolog Bit Score 321.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3924 (ORF: BLASTX 300.0), t_PA3965 (ORF: BLASTX 107.0), psyr_15may02_Scaffold2_revised_gene3993 (ORF: BLASTX 107.0), t_PA5308 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTACCCAGCATCAGAGCAAGCGCGAGCTGGACAAGATCGACCGCAACATCCTCCGCATCCTGCAGGAG 
GAAGGTCGCATTTCCTTCACCGAGCTGGGCGAACGCGTCGGCCTCTCGACCACACCCTGCACCGAACGCGTG 
CGCCGCCTGGAGCGCGAAGGCCTGATCATGGGCTATCACGCCCGGCTCAATCCGCAGCATCTGAAGGCCAGC 
CTGCTGGTGTTCGTCGAGATCAGCCTGGACTACAAGTCCGGCGATACCTTCGAAGAGTTTCGCCGGGCGGTG 
CTCAAGCTGCCCCATGTGCTGGAATGCCACCTGGTGTCCGGCCACTTCGACTACCTGGTGAAGGCTCGCATC 
TCGGAAATGGCGTCCTACCGCAAGCTGCTCGGCGACATCCTGCTGAAACTGCCGCACGTACGCGAGTCGAAG 
AGCTATATCGTCATGGAAGAGGTCAAGGAGTCGCTCGACCTACCGGTTCCGGATTGA