ViewGene
Locus Name:
GeneID:
Location:

GeneID:4376
TrivialName: PA14_69280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69280
PAO1 Ortholog Locus:PA5247
Sequence Length:483
Protein Length:160
Start: 6180543
Stop: 6180061
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08632.1|AE004937_4 (AE004937) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 159/160 (99%), Positives = 159/160 (99%)
Sequence:
ATGCGTATCTGGATCGATGCCGACGCCTGCCCCAAGGCGGCCAAGGAACTGGTCTGCAAGTTCGCCCTCAAG
CGCAAGCTGGAAGTCTGGATGGTCGCCGGCCAGCCGCAGGTCAAGCCGCCGTTCGCCTGCGTGCGTCTGGTG
GTGGTGGAAAGCGGGATGGATGCGGCTGACGATTACCTGGTGGAGCAGGCCGAGCCGGGCGACCTGGCGATC
TGCAGCGACGTACCGCTGGCCGATCGGCTGATCAAGAAACAGGTTGCCGCCCTCGATCCTCGCGGCCGCGAG
TTCGACGCGCGGAACATGGGCGATAAGCTGGCCATGCGCAACCTGATGGCCGACCTGCGTGACCAGGGGCAG
ATggGCGGCggccAGGCGCCCTACGCTGAGCGTGACCGCCAGGCGTTCGCCaaCGCTCTGGACCGCCTGCTC
ACCCGCCTGCAGCGGGAAGCCGATCTACGCGCGAGTCAGCCGCACAGATAG
Translation:
MRIWIDADACPKAAKELVCKFALKRKLEVWMVAGQPQVKPPFACVRLVVVESGMDAADDYLVEQAEPGDLAI
CSDVPLADRLIKKQVAALDPRGREFDARNMGDKLAMRNLMADLRDQGQMGGGQAPYAERDRQAFANALDRLL
TRLQREADLRASQPHR*
AnnotationID:4382GeneID:4376
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 07:07:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5247
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8753




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25896




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34835




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4376_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4376
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6711
                           PA5247_tr
                           translation of PA5247
                           160
                           99.37
                           99.37
                           0
                           822.0
     

     
     
180265
                           gb|AAG08632.1|AE004937_4
                           (AE004937) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           160
                           99.37
                           99.37
                           0
                           822.0
     

     
     
180266
                           gb|AAN70786.1|AE016722_7
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           172
                           65.11
                           74.41
                           22
                           589.0
     

     
     
180268
                           emb|CAD71853.1|
                           (BX294134) conserved hypothetical protein [Pirellula sp.] [Pirellula sp. 1]
                           161
                           44.09
                           59.62
                           5
                           337.0
     

     
     
180267
                           gb|AAR33506.1|
                           (AE017207) YaiI/YqxD family protein [Geobacter sulfurreducens PCA]
                           161
                           43.47
                           62.73
                           11
                           354.0
     

     






      

          
GC ORFID: 47378How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5247Glimmer Score: 

          
Start: 5444230Stop: 5443748

          
Length: 483


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5247 translation of PA5247Homolog Bit Score 321.0

          
Other Homologs:  t_PA5247 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTATCTGGATCGATGCCGACGCCTGCCCCAAGGCGGCCAAGGAACTGGTCTGCAAGTTCGCCCTCAAG 
CGCAAGCTGGAAGTCTGGATGGTCGCCGGCCAGCCGCAGGTCAAGCCGCCGTTCGCCTGCGTGCGTCTGGTG 
GTGGTGGAAAGCGGGATGGATGCGGCTGACGATTACCTGGTGGAGCAGGCCGAGCCGGGCGACCTGGCGATC 
TGCAGCGACGTACCGCTGGCCGATCGGCTGATCAAGAAACAGGTTGCCGCCCTCGATCCTCGCGGCCGCGAG 
TTCGACGCGCGGAACATGGGCGATAAGCTGGCCATGCGCAACCTGATGGCCGACCTGCGTGACCAGGGGCAG 
ATggGCGGCggccAGGCGCCCTACGCTGAGCGTGACCGCCAGGCGTTCGCCaaCGCTCTGGACCGCCTGCTC 
ACCCGCCTGCAGCGGGAAGCCGATCTACGCGCGAGTCAGCCGCACAGATAG