ViewGene

Locus Name:
GeneID:
Location:

GeneID:4375
TrivialName: PA14_63370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63370
PAO1 Ortholog Locus:PA4796
Sequence Length:468
Protein Length:155
Start: 5653725
Stop: 5654192
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08182.1|AE004892_13 (AE004892) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/155 (99%), Positives = 154/155 (99%)
Sequence:
ATGAGCGCGAACCTGCACGGCCTGGAATTCCCCGACGGGCTGTTCTACGCCCCGGACTACAACCTGTGGCTG
CGCGAGGAAGTCGACGGCAGCCTGACCCTGGGCCTGAGCGCCTACGGCTGCGCGTTGTATGGCGAAATCTTC
GCCTTCACCCCCAAGCGCGACGGCTGGCACATCGAACGCGACCGCAGCTTCGGCGTGGTCGAGTTCGCCAAG
GCTGCCTCCTCGGCCCGCAGCCCGTTGGCCGGGACCCTGCTGGCGAGCAACCCGGCGGTGGTCAAGCGCCCG
GCGCTGATCAACCGGGATTGCTACGGCGAGGGCTGGATGGTGCGGCTGCAACCGGACGACTGGGCCTCGGCG
CGGGGAGCGTTTCTCCAGGGAGACGCGGCGCGGGAGGCATTCGCCGAGCGCATGCGCCTGGATGGGTTCGAT
CCGCAGCATCCAGGGGTGCAGGCGCTGGACTTCTGA
Translation:
MSANLHGLEFPDGLFYAPDYNLWLREEVDGSLTLGLSAYGCALYGEIFAFTPKRDGWHIERDRSFGVVEFAK
AASSARSPLAGTLLASNPAVVKRPALINRDCYGEGWMVRLQPDDWASARGAFLQGDAAREAFAERMRLDGFD
PQHPGVQALDF*
AnnotationID:4381GeneID:4375
AnnotatorUID: diggins
Modification Date/Time: 2005-03-10 09:09:33
Gene Name:
Confidence Code:3
GeneProduct:putative glycine cleavage system H protein
Cell Localization:()
Synonyms:PA4796
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0509
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>dbj|BAA17600.1| (D90907) glycine decarboxylase complex H-protein [Synechocystis sp.
           PCC 6803]
          Length = 132

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 4/123 (3%)

>gb|AAO91210.1| (AE016965) glycine cleavage system H protein [Coxiella burnetii RSA
           493]
          Length = 130

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Structural Features:
COG0509, GcvH, Glycine cleavage system H protein (lipoate-binding) 
[Amino acid transport and metabolism]
CD-Length = 131 residues, 100.0% aligned
Score =  139 bits (353), Expect = 9e-35
Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Genomic Context:
Comment:
ReferenceID:8751
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25894
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37691
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4375_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4375

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6710 PA4796_tr translation of PA4796 155 99.35 99.35 0 822.0
180264 gb|AAG08182.1|AE004892_13 (AE004892) hypothetical protein PA4796 [Pseudomonas aeruginosa PAO1] 155 99.35 99.35 0 822.0
GC ORFID: 47377How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4796Glimmer Score:
Start: 4917405Stop: 4917872
Length: 468
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4796 translation of PA4796Homolog Bit Score 321.0
Other Homologs: t_PA4796 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGCGAACCTGCACGGCCTGGAATTCCCCGACGGGCTGTTCTACGCCCCGGACTACAACCTGTGGCTG
CGCGAGGAAGTCGACGGCAGCCTGACCCTGGGCCTGAGCGCCTACGGCTGCGCGTTGTATGGCGAAATCTTC
GCCTTCACCCCCAAGCGCGACGGCTGGCACATCGAACGCGACCGCAGCTTCGGCGTGGTCGAGTTCGCCAAG
GCTGCCTCCTCGGCCCGCAGCCCGTTGGCCGGGACCCTGCTGGCGAGCAACCCGGCGGTGGTCAAGCGCCCG
GCGCTGATCAACCGGGATTGCTACGGCGAGGGCTGGATGGTGCGGCTGCAACCGGACGACTGGGCCTCGGCG
CGGGGAGCGTTTCTCCAGGGAGACGCGGCGCGGGAGGCATTCGCCGAGCGCATGCGCCTGGATGGGTTCGAT
CCGCAGCATCCAGGGGTGCAGGCGCTGGACTTCTGA