ViewGene

Locus Name:
GeneID:
Location:

GeneID:4373
TrivialName: PA14_43040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43040
PAO1 Ortholog Locus:PA1657
Sequence Length:507
Protein Length:168
Start: 3829596
Stop: 3829090
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05046.1|AE004593_8 (AE004593) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 167/168 (99%), Positives = 167/168 (99%)
Sequence:
ATGGCCAAAGAAGGCTCGGTAGCCCCAAAGGAACGCATCAACGTCACTTTCAAGCCCGCCACCGGCGGCGCC
CAGGAAGAAATCGAACTGCCGTTGAAGCTACTGGCGATCGGCGATTACACCCAGCGCGGGGATGAGCGCAAG
GTGGAGGACCGCAAGCCGATCGGCATCGACAAGATGACCTTCGACGAGGTCCTGGCCAAGCAGGAGCTGGGG
CTGACGCTGAGCGTACCCAATCGTCTCCAGGAGGAGGGCGGCAGCGACGAGCTGGCGGTGGGGCTGCAGATC
AACTCGATGAAGGACTTCAACCCGGCCAGCATCGTCGAGCAGGTGCCCGAGCTGAAGAAGCTGATGGAGTTG
CGCGATGCGCTGGTGGCCCTCAAGGGCCCGCTGGGCAACGCCCCGGCGTTCCGCAAGGCCATCGAAAGCGTA
CTCGCCGACGACGAGTCCCGTAGCCGTGTGCTGGGCGAGCTGGGGCTGAGCGCCGCCCCCTCCCAGGACGCC
TGA
Translation:
MAKEGSVAPKERINVTFKPATGGAQEEIELPLKLLAIGDYTQRGDERKVEDRKPIGIDKMTFDEVLAKQELG
LTLSVPNRLQEEGGSDELAVGLQINSMKDFNPASIVEQVPELKKLMELRDALVALKGPLGNAPAFRKAIESV
LADDESRSRVLGELGLSAAPSQDA*
AnnotationID:4379GeneID:4373
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 17:05:36
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1657
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:8747
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25890
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37163
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4373_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4373

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6708 PA1657_tr translation of PA1657 168 99.40 99.40 0 823.0
180171 gb|AAG05046.1|AE004593_8 (AE004593) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 168 99.40 99.40 0 823.0
180172 gb|AAO58855.1| (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 169 87.57 91.12 2 709.0
180173 gb|AAO56048.1| (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 168 70.23 82.14 2 600.0
180174 dbj|BAC59665.1| (AP005078) conserved hypothetical protein [Vibrio parahaemolyticus] 171 52.04 70.76 6 450.0
GC ORFID: 47375How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1657Glimmer Score:
Start: 1124313Stop: 1124819
Length: 507
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1657 translation of PA1657Homolog Bit Score 321.0
Other Homologs: t_PA1657 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCAAAGAAGGCTCGGTAGCCCCAAAGGAACGCATCAACGTCACTTTCAAGCCCGCCACCGGCGGCGCC
CAGGAAGAAATCGAACTGCCGTTGAAGCTACTGGCGATCGGCGATTACACCCAGCGCGGGGATGAGCGCAAG
GTGGAGGACCGCAAGCCGATCGGCATCGACAAGATGACCTTCGACGAGGTCCTGGCCAAGCAGGAGCTGGGG
CTGACGCTGAGCGTACCCAATCGTCTCCAGGAGGAGGGCGGCAGCGACGAGCTGGCGGTGGGGCTGCAGATC
AACTCGATGAAGGACTTCAACCCGGCCAGCATCGTCGAGCAGGTGCCCGAGCTGAAGAAGCTGATGGAGTTG
CGCGATGCGCTGGTGGCCCTCAAGGGCCCGCTGGGCAACGCCCCGGCGTTCCGCAAGGCCATCGAAAGCGTA
CTCGCCGACGACGAGTCCCGTAGCCGTGTGCTGGGCGAGCTGGGGCTGAGCGCCGCCCCCTCCCAGGACGCC
TGA