ViewGene

Locus Name:
GeneID:
Location:

GeneID:4372
TrivialName: PA14_53650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53650
PAO1 Ortholog Locus:PA0822
Sequence Length:447
Protein Length:148
Start: 4758490
Stop: 4758936
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04211.1|AE004517_6 (AE004517) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 148/148 (100%), Positives = 148/148 (100%)
Sequence:
ATGACCAAGAACCCACCGCAGCCGATTCTCGATAGCCAGACCGGTAACAGTCCACATGGCTGGATACCGGGA
TGGATCAGCAAGTATTGGGATGAAGATCCGGAGCATCCGCCGTTCAAGCCAGGGAAAGGAATGATTCGCAGG
CCCGACGTGATCATCGTTCAGAATCCCAACAGGCCGCCAACCCAGGACAATATCAAACAGGTGGTGGAGATG
AAGTTTCCGCCTGACCCACATAATAGGGAACAACTTGAGGATTATGCAGCGATTGCCGGCAACAAGAACAAG
ATTGTTGAAATGAAACCCTCCGACTGCGACTGTGGCCAGGAAAATCAACGATCCAAGGTGCCAGTAGAGCAA
GCAGGGTGGGCCGTCGCCATCGCAGGTGGAGTGATGTTCGTCTTGACCCGAGGCCGTTCCCCTCGCCCGATG
ATTCCCGCCTATTGA
Translation:
MTKNPPQPILDSQTGNSPHGWIPGWISKYWDEDPEHPPFKPGKGMIRRPDVIIVQNPNRPPTQDNIKQVVEM
KFPPDPHNREQLEDYAAIAGNKNKIVEMKPSDCDCGQENQRSKVPVEQAGWAVAIAGGVMFVLTRGRSPRPM
IPAY*
AnnotationID:4378GeneID:4372
AnnotatorUID: danlee
Modification Date/Time: 2004-04-22 13:01:49
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0822
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:8745
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25888
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4372

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6707 PA0822_tr translation of PA0822 148 99.99 99.99 0 823.0
180169 gb|AAG04211.1|AE004517_6 (AE004517) hypothetical protein PA0822 [Pseudomonas aeruginosa PAO1] 148 99.99 99.99 0 823.0
180170 gb|AAL47562.1| (AY063741) gp30 [Bacteriophage phiE125] [Burkholderia thailandensis] 256 25.00 35.15 120 310.0
GC ORFID: 47374How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0822Glimmer Score:
Start: 195417Stop: 194971
Length: 447
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0822 translation of PA0822Homolog Bit Score 321.0
Other Homologs: t_PA0822 (ORF: GLIMMER)
GC ORF Sequence
ATGACCAAGAACCCACCGCAGCCGATTCTCGATAGCCAGACCGGTAACAGTCCACATGGCTGGATACCGGGA
TGGATCAGCAAGTATTGGGATGAAGATCCGGAGCATCCGCCGTTCAAGCCAGGGAAAGGAATGATTCGCAGG
CCCGACGTGATCATCGTTCAGAATCCCAACAGGCCGCCAACCCAGGACAATATCAAACAGGTGGTGGAGATG
AAGTTTCCGCCTGACCCACATAATAGGGAACAACTTGAGGATTATGCAGCGATTGCCGGCAACAAGAACAAG
ATTGTTGAAATGAAACCCTCCGACTGCGACTGTGGCCAGGAAAATCAACGATCCAAGGTGCCAGTAGAGCAA
GCAGGGTGGGCCGTCGCCATCGCAGGTGGAGTGATGTTCGTCTTGACCCGAGGCCGTTCCCCTCGCCCGATG
ATTCCCGCCTATTGA