ViewGene
Locus Name:
GeneID:
Location:

GeneID:4370
TrivialName: PA14_59190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59190
PAO1 Ortholog Locus:
Sequence Length:471
Protein Length:156
Start: 5270173
Stop: 5270643
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84216.1| (AY273869) putative luminal binding protein [Pseudomonas aeruginosa]
Identities = 156/156 (100%), Positives = 156/156 (100%)
Sequence:
ATGCGAAAAGAGAATATATCTGCCGAAATCACAGAGCGAGCTTTTGATTTTTTCTATTGGTTCTCGCGATTT
GAGTTCAGCCTCAAAGAGAATGGCTACTTAAAAAATTACAAACCTGGAGCTAGGGCAGAGCCGGGATGGGAA
AATTTTGTACAAAACCATTCTGACAAATACTCTCTTTCCCAATCAGCCACAGCACTAATCGAGCAGAGTCCA
GAGCAACAAATAGTCCTGCCCGGTAGAGAGCTGGGTTGGCGTCCGGTTAAATTAGATGAGGACAAAAGCGAC
TTAGCTAGAGTCGCTCGCTTACTTAAGACCGTGCGAAACAATCTATTTCACGGAGGCAAGCATGGTGGTGCC
AACTGGGACAACCCAGCGAGGACAATACATCTTATTCTTTTAAGTAAAGCTATCCTTGACGAGTTTGCTGCA
CTAGGAGACTTTGAGGCTGACTACAAGAGAATTTACTGA
Translation:
MRKENISAEITERAFDFFYWFSRFEFSLKENGYLKNYKPGARAEPGWENFVQNHSDKYSLSQSATALIEQSP
EQQIVLPGRELGWRPVKLDEDKSDLARVARLLKTVRNNLFHGGKHGGANWDNPARTIHLILLSKAILDEFAA
LGDFEADYKRIY*
AnnotationID:4376GeneID:4370
AnnotatorUID: diggins
Modification Date/Time: 2006-01-16 21:09:30
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:putative luminal binding protein
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
CDD Search: No hits above 0.01 threshold


















    ReferenceID:8741




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25884




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4370
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
180152
                           gb|AAP84216.1|
                           (AY273869) putative luminal binding protein [Pseudomonas aeruginosa]
                           156
                           99.99
                           99.99
                           0
                           825.0
     

     
     
180153
                           dbj|BAB16261.1|
                           (AP002086) similar to gene for luminal binding protein exon 6 in Arabidopsis thaliana [Rhizobium rhizogenes] [Agrobacterium rhizogenes]
                           156
                           41.02
                           58.97
                           0
                           319.0
     

     






      

          
GC ORFID: 47372How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL091Glimmer Score: 

          
Start: 4533852Stop: 4534322

          
Length: 471


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL091 156 Homolog: riorf142 / Similar to luminal binding protein / Rhizobium rhizogenes / MAFF03-01724 (BAB16261) translation of RL091Homolog Bit Score 322.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCGAAAAGAGAATATATCTGCCGAAATCACAGAGCGAGCTTTTGATTTTTTCTATTGGTTCTCGCGATTT 
GAGTTCAGCCTCAAAGAGAATGGCTACTTAAAAAATTACAAACCTGGAGCTAGGGCAGAGCCGGGATGGGAA 
AATTTTGTACAAAACCATTCTGACAAATACTCTCTTTCCCAATCAGCCACAGCACTAATCGAGCAGAGTCCA 
GAGCAACAAATAGTCCTGCCCGGTAGAGAGCTGGGTTGGCGTCCGGTTAAATTAGATGAGGACAAAAGCGAC 
TTAGCTAGAGTCGCTCGCTTACTTAAGACCGTGCGAAACAATCTATTTCACGGAGGCAAGCATGGTGGTGCC 
AACTGGGACAACCCAGCGAGGACAATACATCTTATTCTTTTAAGTAAAGCTATCCTTGACGAGTTTGCTGCA 
CTAGGAGACTTTGAGGCTGACTACAAGAGAATTTACTGA