ViewGene
Locus Name:
GeneID:
Location:

GeneID:437
TrivialName: PA14_37640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37640
PAO1 Ortholog Locus:PA2078
Sequence Length:1875
Protein Length:624
Start: 3349149
Stop: 3351023
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05466.1|AE004635_4 (AE004635) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 615/624 (98%), Positives = 618/624 (99%)
Sequence:
ATGCATCCGACCTTTTCGCGGGTCCTGCTGGCCGCCGCGCTGGCCAGCGCCGGCAGCCCTGCCGTCGCCACC
GAAATCCAGCTCGAGCAAGGCTGGAACGCCGAGCAACGCGCCTCCTGGTACGACGCCTCGCTCGGTTCGCGG
CTGCTGCCGCTGGCCTGGGCCCAGGCGCTGGAACGTCCGGACAGCGAGGAACGCCTGTTCTCCGAAGACAAC
GCCCGGCGCCTCGGCTTTCCCCTGCGCAACTGGCAAGGCGGCGAACTGCGCCTGCCGCGCGGCTTCGCCCTC
GACCAGCAGGACGACAGCCAGTTCTCCGACACCCGCCTGCGCTGGAAAGCCCGCCAGTCGTCCAGCGAACCC
TGGGTCGGGCTGAATTGCGCCGGCTGCCACTCCACCGACATCAGTTACCGCGGCAGCGAACTGACCGTCGAC
GCCGGCGCCACCCTGGCCAACGTCCAGGCGATCTTCGACGAAGTGCTCGCCGCGCTGCGCCGCACCAGCGAC
GACGGCGACAAGTTCGCGCGCTTCGCCGGCAACGTCCTCGGCAGCGAGGACAGCCCGGCCAACCGCGAGCTG
CTGAAGGCCGCCCTGGTCAAACGCGCGGCGCTGATCGACACCCTGCTGAGCATGTCCGCCACCGACCTGCAA
CCCGGCCCGGGGCGCCTCGACGCCACTGGCCAGTCACTCAACCGCGCGGCGATCAACTCTGGCGCCCGTCAC
CTGCAAGCGAACCCGACCGACGCGCCGACCAGCTTCCCGGCACTGTGGCACACGTTGCAGATGGACAAGCTG
CAATCCAGCGGATTCGTGCCCAACGTCAAGGTCCTCGACCTCAACGGCCAGGTCTTCGACCTCGGCTACCTG
GCCGGCGACATCGGCGTGGTCCAGGGCGACTACGGCGACGTGGTCAGCCATCCGCTGTCCGGCCTGGAGGGC
TACATCTCGAGCATCCGCGTGGACAACCTGACCCGTGTCGAGGGCCTGATCCACAAGCTCAAGGCGCCGGCC
TGGCCGAGCCAGCTGTTCGGCGCCCCGGACAGCGCCAGGCTGGCCCAGGGCAAGCGCCTCTACGAGGAGAAC
TGCGCGGCCTGCCATGCGAGCATCGGCCGCGACGACCTGCAAACCCCGATCAAGGTCCGCCAGGTGCGCCTG
AGGGCCCATGGCGACGACGCGCCGATCGGCACCGATCCGTGGATGGCCTGCAACACCTTCACCTTCAGCAGC
CCCAGCGGCAACTACTTCGGCTTGTTCCGGCCGTCCCTCGGCACCCCCAGCGGCGTCGGCATCGTCGGGCGA
ACCTCGAAGATCGCCGACATGCAGGTCCCCGAGGTGTTCCAGATCATGCTCGGCAAGAAAGGCCAGCTGGCC
GACGGCATCGCCGAGATCATCCACGCCATCGTCACCGGGCAGCAGACCCTGCCCGGCTCCGACAGCCTGCAA
GCGCTTCCCGCCGGGCAACTGCTGCTGGCCGGCGGCGGCCCTGCCGGCAGCCAGGCGCCGAGCCTCGCCGCC
GGCGAAGTCCCCGCCGACAAGAGTGCGCGCAAGGACTACTGCCTGAACACCGAGCATCCGTTCCTCGGCTAC
ATCGCTCGCCCGCTGAACGGCATCTGGGCCACCGCGCCCTACCTGCACAACGGTTCGGTGCCGTCGCTGTAC
GACCTGCTGCTGCCCCAGGAGCAACGGCCGACCACCTTCTACACCGGCAGCCACGAGTTCGATCCGAGCCGG
GTCGGCTACCTCACCGCGCCCGGCCCGGACAACGCCTTCCTCTTCGACACCCACCTGGAAGGCAACTCCAAC
GCCGGCCACGACTTCGCCCGCGAGTACGACGAAAGCCAGCGCCTGGCGCTGCTCGAATACCTCAAGACCCTG
TGA
Translation:
MHPTFSRVLLAAALASAGSPAVATEIQLEQGWNAEQRASWYDASLGSRLLPLAWAQALERPDSEERLFSEDN
ARRLGFPLRNWQGGELRLPRGFALDQQDDSQFSDTRLRWKARQSSSEPWVGLNCAGCHSTDISYRGSELTVD
AGATLANVQAIFDEVLAALRRTSDDGDKFARFAGNVLGSEDSPANRELLKAALVKRAALIDTLLSMSATDLQ
PGPGRLDATGQSLNRAAINSGARHLQANPTDAPTSFPALWHTLQMDKLQSSGFVPNVKVLDLNGQVFDLGYL
AGDIGVVQGDYGDVVSHPLSGLEGYISSIRVDNLTRVEGLIHKLKAPAWPSQLFGAPDSARLAQGKRLYEEN
CAACHASIGRDDLQTPIKVRQVRLRAHGDDAPIGTDPWMACNTFTFSSPSGNYFGLFRPSLGTPSGVGIVGR
TSKIADMQVPEVFQIMLGKKGQLADGIAEIIHAIVTGQQTLPGSDSLQALPAGQLLLAGGGPAGSQAPSLAA
GEVPADKSARKDYCLNTEHPFLGYIARPLNGIWATAPYLHNGSVPSLYDLLLPQEQRPTTFYTGSHEFDPSR
VGYLTAPGPDNAFLFDTHLEGNSNAGHDFAREYDESQRLALLEYLKTL*
AnnotationID:446GeneID:437
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 06:06:33
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2078
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:877




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18019




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:437
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
744
                           PA2078_tr
                           translation of PA2078
                           624
                           98.55
                           99.03
                           0
                           3208.0
     

     
     
33233
                           gb|AAG05466.1|AE004635_4
                           (AE004635) hypothetical protein PA2078 [Pseudomonas aeruginosa PAO1]
                           624
                           98.55
                           99.03
                           0
                           3208.0
     

     
     
745
                           PA2077_tr
                           translation of PA2077
                           655
                           42.59
                           58.16
                           52
                           1211.0
     

     
     
33234
                           gb|AAG05465.1|AE004635_3
                           (AE004635) hypothetical protein PA2077 [Pseudomonas aeruginosa PAO1]
                           655
                           42.59
                           58.16
                           52
                           1211.0
     

     
     
746
                           PA1941_tr
                           translation of PA1941
                           739
                           28.28
                           39.37
                           223
                           609.0
     

     






      

          
GC ORFID: 43439How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2078Glimmer Score: 

          
Start: 1604765Stop: 1602891

          
Length: 1875


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2078 translation of PA2078Homolog Bit Score 1240.0

          
Other Homologs:  t_PA2077 (ORF: BLASTX 454.0), t_PA2078 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATCCGACCTTTTCGCGGGTCCTGCTGGCCGCCGCGCTGGCCAGCGCCGGCAGCCCTGCCGTCGCCACC 
GAAATCCAGCTCGAGCAAGGCTGGAACGCCGAGCAACGCGCCTCCTGGTACGACGCCTCGCTCGGTTCGCGG 
CTGCTGCCGCTGGCCTGGGCCCAGGCGCTGGAACGTCCGGACAGCGAGGAACGCCTGTTCTCCGAAGACAAC 
GCCCGGCGCCTCGGCTTTCCCCTGCGCAACTGGCAAGGCGGCGAACTGCGCCTGCCGCGCGGCTTCGCCCTC 
GACCAGCAGGACGACAGCCAGTTCTCCGACACCCGCCTGCGCTGGAAAGCCCGCCAGTCGTCCAGCGAACCC 
TGGGTCGGGCTGAATTGCGCCGGCTGCCACTCCACCGACATCAGTTACCGCGGCAGCGAACTGACCGTCGAC 
GCCGGCGCCACCCTGGCCAACGTCCAGGCGATCTTCGACGAAGTGCTCGCCGCGCTGCGCCGCACCAGCGAC 
GACGGCGACAAGTTCGCGCGCTTCGCCGGCAACGTCCTCGGCAGCGAGGACAGCCCGGCCAACCGCGAGCTG 
CTGAAGGCCGCCCTGGTCAAACGCGCGGCGCTGATCGACACCCTGCTGAGCATGTCCGCCACCGACCTGCAA 
CCCGGCCCGGGGCGCCTCGACGCCACTGGCCAGTCACTCAACCGCGCGGCGATCAACTCTGGCGCCCGTCAC 
CTGCAAGCGAACCCGACCGACGCGCCGACCAGCTTCCCGGCACTGTGGCACACGTTGCAGATGGACAAGCTG 
CAATCCAGCGGATTCGTGCCCAACGTCAAGGTCCTCGACCTCAACGGCCAGGTCTTCGACCTCGGCTACCTG 
GCCGGCGACATCGGCGTGGTCCAGGGCGACTACGGCGACGTGGTCAGCCATCCGCTGTCCGGCCTGGAGGGC 
TACATCTCGAGCATCCGCGTGGACAACCTGACCCGTGTCGAGGGCCTGATCCACAAGCTCAAGGCGCCGGCC 
TGGCCGAGCCAGCTGTTCGGCGCCCCGGACAGCGCCAGGCTGGCCCAGGGCAAGCGCCTCTACGAGGAGAAC 
TGCGCGGCCTGCCATGCGAGCATCGGCCGCGACGACCTGCAAACCCCGATCAAGGTCCGCCAGGTGCGCCTG 
AGGGCCCATGGCGACGACGCGCCGATCGGCACCGATCCGTGGATGGCCTGCAACACCTTCACCTTCAGCAGC 
CCCAGCGGCAACTACTTCGGCTTGTTCCGGCCGTCCCTCGGCACCCCCAGCGGCGTCGGCATCGTCGGGCGA 
ACCTCGAAGATCGCCGACATGCAGGTCCCCGAGGTGTTCCAGATCATGCTCGGCAAGAAAGGCCAGCTGGCC 
GACGGCATCGCCGAGATCATCCACGCCATCGTCACCGGGCAGCAGACCCTGCCCGGCTCCGACAGCCTGCAA 
GCGCTTCCCGCCGGGCAACTGCTGCTGGCCGGCGGCGGCCCTGCCGGCAGCCAGGCGCCGAGCCTCGCCGCC 
GGCGAAGTCCCCGCCGACAAGAGTGCGCGCAAGGACTACTGCCTGAACACCGAGCATCCGTTCCTCGGCTAC 
ATCGCTCGCCCGCTGAACGGCATCTGGGCCACCGCGCCCTACCTGCACAACGGTTCGGTGCCGTCGCTGTAC 
GACCTGCTGCTGCCCCAGGAGCAACGGCCGACCACCTTCTACACCGGCAGCCACGAGTTCGATCCGAGCCGG 
GTCGGCTACCTCACCGCGCCCGGCCCGGACAACGCCTTCCTCTTCGACACCCACCTGGAAGGCAACTCCAAC 
GCCGGCCACGACTTCGCCCGCGAGTACGACGAAAGCCAGCGCCTGGCGCTGCTCGAATACCTCAAGACCCTG 
TGA