ViewGene
Locus Name:
GeneID:
Location:

GeneID:4369
TrivialName: PA14_07240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07240
PAO1 Ortholog Locus:PA0556
Sequence Length:483
Protein Length:160
Start: 624443
Stop: 624925
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03945.1|AE004492_4 (AE004492) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/160 (98%), Positives = 158/160 (98%)
Sequence:
ATGCGCCGCTGGCTCCTGACCCTGCCGTTCCTCCTGCTGGCCGGTTGCGCTGGCCTGCACGCGCCGTCCCGC
GACGTCGAGGAGGCCGCGTCGCCGAGCGTAGCGCGTGATCCCGCCGATCCGCAGGATTGCCTGGCGCGTAGC
GACTGCACGACCAAGACTTCGCGCACCCTGCTGTTCGTCTTCGACTATGCAGAGGCCGGCGGCGAACTGGTG
GTGCGCGACGGTCGCCGACTGGAAACCCCGCCGGCGCCGCAACGCTCCACCTGGCCGGCGTTGCGCATCCAG
CTGGCCGAGCCGGTCAACGGTCGCTTCGAGTTCGAGAGCCCCTGCCTGCGCAAGAGCGGCAAGGGCTGCCGC
TACAGCCAGGCTACGCTGCTGAAGGTCTACCGCAGCTACCTGGTCGGCAAGCCTTGCTCGCTGCTCAGCCCT
CGCGCAGTGAAACGCTGCGTCGACCCGGCGACGACCGCCGCGCGGCGCTGA
Translation:
MRRWLLTLPFLLLAGCAGLHAPSRDVEEAASPSVARDPADPQDCLARSDCTTKTSRTLLFVFDYAEAGGELV
VRDGRRLETPPAPQRSTWPALRIQLAEPVNGRFEFESPCLRKSGKGCRYSQATLLKVYRSYLVGKPCSLLSP
RAVKRCVDPATTAARR*
AnnotationID:4375GeneID:4369
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 07:07:18
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0556
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8739




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25882




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4369
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6705
                           PA0556_tr
                           translation of PA0556
                           160
                           98.12
                           98.75
                           0
                           826.0
     

     
     
180151
                           gb|AAG03945.1|AE004492_4
                           (AE004492) hypothetical protein PA0556 [Pseudomonas aeruginosa PAO1]
                           160
                           98.12
                           98.75
                           0
                           826.0
     

     






      

          
GC ORFID: 47371How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0556Glimmer Score: 

          
Start: 6425785Stop: 6426267

          
Length: 483


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0556 translation of PA0556Homolog Bit Score 322.0

          
Other Homologs:  t_PA0556 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCGCTGGCTCCTGACCCTGCCGTTCCTCCTGCTGGCCGGTTGCGCTGGCCTGCACGCGCCGTCCCGC 
GACGTCGAGGAGGCCGCGTCGCCGAGCGTAGCGCGTGATCCCGCCGATCCGCAGGATTGCCTGGCGCGTAGC 
GACTGCACGACCAAGACTTCGCGCACCCTGCTGTTCGTCTTCGACTATGCAGAGGCCGGCGGCGAACTGGTG 
GTGCGCGACGGTCGCCGACTGGAAACCCCGCCGGCGCCGCAACGCTCCACCTGGCCGGCGTTGCGCATCCAG 
CTGGCCGAGCCGGTCAACGGTCGCTTCGAGTTCGAGAGCCCCTGCCTGCGCAAGAGCGGCAAGGGCTGCCGC 
TACAGCCAGGCTACGCTGCTGAAGGTCTACCGCAGCTACCTGGTCGGCAAGCCTTGCTCGCTGCTCAGCCCT 
CGCGCAGTGAAACGCTGCGTCGACCCGGCGACGACCGCCGCGCGGCGCTGA