ViewGene

Locus Name:
GeneID:
Location:

GeneID:4366
TrivialName: PA14_41930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41930
PAO1 Ortholog Locus:PA1749
Sequence Length:486
Protein Length:161
Start: 3744477
Stop: 3743992
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05138.1|AE004601_3 (AE004601) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 161/161 (100%), Positives = 161/161 (100%)
Sequence:
ATGGGCCCTATCGTTAGTCCGGCCTTGCATGCGGTGCAGGCCAGCCGTTTCGAGGATGTCCGCCAGGCGCGA
TCCGCCACCGGGACGAGAACGGACGAAGGTCTCCGGCGGTCCGCTGGAGGCCGGTACGCGGGGGCGTCCTCG
CGAGGAACCTATCAATCAGGCGCGGGTCGGGTTACGAACCCGTTGAGGAGATCCAAAGTGAGCGAGTCCCTG
TCCATCCATCATGACGTGGGCGGCCATCAATTCGAGACAACGGTGGATGGCCATCGTGCCTATCTGGCCTAT
ATGGACCTGGGCAAGCAGACGCTGGATATCTACCGGACCTTCGTACCGGATTCGCTGCGTGGTCGCGGTATC
GCCGCCGCGTTGACCGAGCACGCCCTGCAGTACGCCGACCGCATGGGCTACAGCGTGATCCCGTCCTGCTCC
TACGTGGAGCGTTACATCGAGCGTCGCCAGCGTCAGGCCGATCCGGCCGCCTGA
Translation:
MGPIVSPALHAVQASRFEDVRQARSATGTRTDEGLRRSAGGRYAGASSRGTYQSGAGRVTNPLRRSKVSESL
SIHHDVGGHQFETTVDGHRAYLAYMDLGKQTLDIYRTFVPDSLRGRGIAAALTEHALQYADRMGYSVIPSCS
YVERYIERRQRQADPAA*
AnnotationID:4372GeneID:4366
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 09:09:25
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:PA1749
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2388
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG2388, COG2388, Predicted acetyltransferase 
CD-Length = 99 residues,  91.9% aligned
Score = 86.5 bits (214), Expect = 1e-18
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Genomic Context:
Comment:
ReferenceID:8733
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25876
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37157
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4366_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4366

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6702 PA1749_tr translation of PA1749 161 99.99 99.99 0 826.0
180074 gb|AAG05138.1|AE004601_3 (AE004601) hypothetical protein PA1749 [Pseudomonas aeruginosa PAO1] 161 99.99 99.99 0 826.0
180075 gb|AAN67936.1|AE016426_1 (AE016782) conserved domain protein [Pseudomonas putida KT2440] 162 51.85 63.58 20 387.0
180076 gb|AAO55788.1| (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 162 42.59 47.53 68 365.0
GC ORFID: 47368How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1749Glimmer Score:
Start: 1209432Stop: 1209917
Length: 486
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1749 translation of PA1749Homolog Bit Score 322.0
Other Homologs: psyr_15may02_Scaffold13_revised_gene2190 (ORF: BLASTX 146.0)
GC ORF Sequence
ATGGGCCCTATCGTTAGTCCGGCCTTGCATGCGGTGCAGGCCAGCCGTTTCGAGGATGTCCGCCAGGCGCGA
TCCGCCACCGGGACGAGAACGGACGAAGGTCTCCGGCGGTCCGCTGGAGGCCGGTACGCGGGGGCGTCCTCG
CGAGGAACCTATCAATCAGGCGCGGGTCGGGTTACGAACCCGTTGAGGAGATCCAAAGTGAGCGAGTCCCTG
TCCATCCATCATGACGTGGGCGGCCATCAATTCGAGACAACGGTGGATGGCCATCGTGCCTATCTGGCCTAT
ATGGACCTGGGCAAGCAGACGCTGGATATCTACCGGACCTTCGTACCGGATTCGCTGCGTGGTCGCGGTATC
GCCGCCGCGTTGACCGAGCACGCCCTGCAGTACGCCGACCGCATGGGCTACAGCGTGATCCCGTCCTGCTCC
TACGTGGAGCGTTACATCGAGCGTCGCCAGCGTCAGGCCGATCCGGCCGCCTGA