ViewGene
Locus Name:
GeneID:
Location:

GeneID:4365
TrivialName: PA14_43890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43890
PAO1 Ortholog Locus:PA1593
Sequence Length:474
Protein Length:157
Start: 3908272
Stop: 3907799
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04982.1|AE004587_6 (AE004587) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 156/157 (99%), Positives = 157/157 (100%)
Sequence:
ATGTCGGAAAATCCTCTCCTCGAGCGCGCCCGGCGCTTTCTCTCGGCCTTGCGTCATTGCCAGGTGCTGGGG
TTGACGGTCGAGGCCGCCGACGAGAAAGGACTGACCCTGCGCCTGCCCTACAGCCAGGCGATCATCGGCAAC
CCGGAAAGCGGGGTCGTCCACGGCGGCGCGATCACCACCCTGATGGACACCACCTGCGGTATTTCCACGGTC
TGCGTGCTGCCGGACTTCGAGATCTGCCCGACGCTCGACCTGCGCATCGACTATATGCATCCCGCCGAACCG
CACAAGGATGTCTATGGCTTCGCCGAGTGCTACCGGGTCACGCCGAACGTGATCTTCACCCGCGGCTTCGCC
TACCAGGACGATCCGGGCCAGCCCATCGCCCATGTCGTCGGCGCCTTCATGCGCATGGGCGGTTCGGCTCGC
TCCGGGGCGGCCAGGCCGGCCGCGCAGGGAGGTGCGGCATGA
Translation:
MSENPLLERARRFLSALRHCQVLGLTVEAADEKGLTLRLPYSQAIIGNPESGVVHGGAITTLMDTTCGISTV
CVLPDFEICPTLDLRIDYMHPAEPHKDVYGFAECYRVTPNVIFTRGFAYQDDPGQPIAHVVGAFMRMGGSAR
SGAARPAAQGGAA*
AnnotationID:4371GeneID:4365
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 14:02:35
Gene Name:
Confidence Code:3
GeneProduct:putative thioesterase
Cell Localization:()
Synonyms:PA1593
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2050,pfam03061
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2050, PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 141 residues,  97.9% aligned
Score = 82.8 bits (204), Expect = 2e-17
Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 3/141 (2%)

pfam03061, 4HBT, Thioesterase superfamily. 
CD-Length = 78 residues, 100.0% aligned
Score = 41.8 bits (98), Expect = 4e-05
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 1/79 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8731




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25874




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37229




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4365_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4365
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6701
                           PA1593_tr
                           translation of PA1593
                           157
                           99.36
                           99.99
                           0
                           825.0
     

     
     
180070
                           gb|AAG04982.1|AE004587_6
                           (AE004587) hypothetical protein PA1593 [Pseudomonas aeruginosa PAO1]
                           157
                           99.36
                           99.99
                           0
                           825.0
     

     
     
180071
                           gb|AAN69762.1|AE016612_8
                           (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440]
                           161
                           63.35
                           77.01
                           7
                           535.0
     

     
     
180072
                           gb|AAN55750.1|AE015711_7
                           (AE015711) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           175
                           48.00
                           59.42
                           18
                           418.0
     

     
     
180073
                           gb|AAQ59971.1|
                           (AE016918) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           161
                           37.26
                           53.41
                           10
                           292.0
     

     






      

          
GC ORFID: 47367How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1593Glimmer Score: 

          
Start: 1045637Stop: 1046110

          
Length: 474


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1593 translation of PA1593Homolog Bit Score 322.0

          
Other Homologs:  t_PA1593 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGGAAAATCCTCTCCTCGAGCGCGCCCGGCGCTTTCTCTCGGCCTTGCGTCATTGCCAGGTGCTGGGG 
TTGACGGTCGAGGCCGCCGACGAGAAAGGACTGACCCTGCGCCTGCCCTACAGCCAGGCGATCATCGGCAAC 
CCGGAAAGCGGGGTCGTCCACGGCGGCGCGATCACCACCCTGATGGACACCACCTGCGGTATTTCCACGGTC 
TGCGTGCTGCCGGACTTCGAGATCTGCCCGACGCTCGACCTGCGCATCGACTATATGCATCCCGCCGAACCG 
CACAAGGATGTCTATGGCTTCGCCGAGTGCTACCGGGTCACGCCGAACGTGATCTTCACCCGCGGCTTCGCC 
TACCAGGACGATCCGGGCCAGCCCATCGCCCATGTCGTCGGCGCCTTCATGCGCATGGGCGGTTCGGCTCGC 
TCCGGGGCGGCCAGGCCGGCCGCGCAGGGAGGTGCGGCATGA