ViewGene
Locus Name:
GeneID:
Location:

GeneID:4364
TrivialName: PA14_33890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33890
PAO1 Ortholog Locus:PA2379
Sequence Length:471
Protein Length:156
Start: 3011096
Stop: 3011566
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05767.1|AE004664_4 (AE004664) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 156/156 (100%), Positives = 156/156 (100%)
Sequence:
ATGATTACCCTGAACCTCAATGGCAAGGATCATCAGCTCGATGTCACCGAGGATATGCCCTTGCTCTGGGCC
ATCCGCGACGTCGTCGGCTATACCGGGACCAAGTTCGGCTGCGGCATGGGCCTGTGCGGCTCCTGCACCATC
CATATCGACGGCCAGGCCACCCGTTCCTGCATCACGCCGGTGAGCCTGGCGCAGGGCAGGAAGGTCACCACC
ATCGACCACCTGCACACCGACAAGGTCGGCGAGGTCGTCCAGCAGGCCTGGCTGGACATCGGCGTGGCGCAG
TGCGGCTACTGCCAGGGCGGGCAGATCATGTCGGCCACGGCGTTGCTGAAGAGCAACCCCGCGCCCAGCGAC
GAGCAGATCGAGGCGGCCATGGCCGGCAACATCTGCCGCTGCGGCACCTACAACCGGATCAAGACGGCGATC
CACAACGCCTCCGCCAAGTTGCAGGAGGCCAAGGCATGA
Translation:
MITLNLNGKDHQLDVTEDMPLLWAIRDVVGYTGTKFGCGMGLCGSCTIHIDGQATRSCITPVSLAQGRKVTT
IDHLHTDKVGEVVQQAWLDIGVAQCGYCQGGQIMSATALLKSNPAPSDEQIEAAMAGNICRCGTYNRIKTAI
HNASAKLQEAKA*
AnnotationID:4370GeneID:4364
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 18:06:24
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:aldG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative aldehyde dehydrogenase subunit III
Functional Category Confidence Code:5
COGs:COG2080
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE31210.1| (BX640439) probable oxidoreductase [Bordetella bronchiseptica]
          Length = 154

 Score =  219 bits (558), Expect = 4e-57
 Identities = 98/150 (65%), Positives = 118/150 (78%)

>emb|CAE32912.1| (BX640444) putative oxidoreductase subunit [Bordetella
           bronchiseptica]
          Length = 152

 Score =  207 bits (528), Expect = 1e-53
 Identities = 94/151 (62%), Positives = 115/151 (76%)

>emb|CAC48729.1| (AL603643) putative aldehyde dehydrogenase subunit protein
           [Sinorhizobium meliloti]
          Length = 152

 Score =  193 bits (491), Expect = 3e-49
 Identities = 86/152 (56%), Positives = 114/152 (75%), Gaps = 1/152 (0%)






 
Structural Features:
COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit 
CoxS/CutS homologs 
[Energy production and conversion]
CD-Length = 156 residues,  98.7% aligned
Score =  208 bits (532), Expect = 2e-55
Identities = 78/154 (50%), Positives = 103/154 (66%), Gaps = 1/154 (0%)








   
Genomic Context:






   
Comment:


















    ReferenceID:8729




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25872




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32919




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4364_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4364
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6698
                           PA2379_tr
                           translation of PA2379
                           156
                           99.99
                           99.99
                           0
                           829.0
     

     
     
180025
                           gb|AAG05767.1|AE004664_4
                           (AE004664) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           156
                           99.99
                           99.99
                           0
                           829.0
     

     
     
180026
                           emb|CAE31210.1|
                           (BX640439) probable oxidoreductase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           156
                           64.10
                           76.92
                           2
                           553.0
     

     
     
180027
                           emb|CAE40112.1|
                           (BX640425) probable oxidoreductase [Bordetella parapertussis]
                           156
                           64.10
                           76.92
                           2
                           553.0
     

     
     
180029
                           emb|CAE42405.1|
                           (BX640417) putative oxidoreductase subunit [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           156
                           60.25
                           73.71
                           4
                           527.0
     

     






      

          
GC ORFID: 47366How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2379Glimmer Score: 

          
Start: 1942820Stop: 1942350

          
Length: 471


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2379 translation of PA2379Homolog Bit Score 323.0

          
Other Homologs:  t_PA1881 (ORF: BLASTX 184.0), t_PA1602 (ORF: BLASTX 151.0), t_PA2379 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTACCCTGAACCTCAATGGCAAGGATCATCAGCTCGATGTCACCGAGGATATGCCCTTGCTCTGGGCC 
ATCCGCGACGTCGTCGGCTATACCGGGACCAAGTTCGGCTGCGGCATGGGCCTGTGCGGCTCCTGCACCATC 
CATATCGACGGCCAGGCCACCCGTTCCTGCATCACGCCGGTGAGCCTGGCGCAGGGCAGGAAGGTCACCACC 
ATCGACCACCTGCACACCGACAAGGTCGGCGAGGTCGTCCAGCAGGCCTGGCTGGACATCGGCGTGGCGCAG 
TGCGGCTACTGCCAGGGCGGGCAGATCATGTCGGCCACGGCGTTGCTGAAGAGCAACCCCGCGCCCAGCGAC 
GAGCAGATCGAGGCGGCCATGGCCGGCAACATCTGCCGCTGCGGCACCTACAACCGGATCAAGACGGCGATC 
CACAACGCCTCCGCCAAGTTGCAGGAGGCCAAGGCATGA