ViewGene
Locus Name:
GeneID:
Location:

GeneID:4362
TrivialName: PA14_54740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54740
PAO1 Ortholog Locus:PA0737
Sequence Length:450
Protein Length:149
Start: 4853291
Stop: 4852842
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04126.1|AE004509_1 (AE004509) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 142/151 (94%), Positives = 144/151 (95%), Gaps = 2/151 (1%)
Sequence:
ATGTGGCGCACATTCCTGAGAGTCCCGCTTCTTCTGCTTCTCGCCAGCCTGGGTGGCTGCGCGGTGTATGAC
TACGACTACGATGACGGCGACTGGCGCCGCTATCGCGGCCAGCCCTACGCCTACGAAGTGCCGCGCTATCGC
GTCTACGACGATGGCTGGCGTAGCGAACGGCGCTACTACTCGACGCGCTACTACGACCAACGCTACTACCCG
GCGCCACGCCGCTACGATGGCCACCGCGACTACCGGCGCGAGCAATATCGCTACCCGCAGCGCCACCACGAA
TCGCGCCCGGCCCATCGCGGCGAGCGGCATCCGGGCAACTGGCAGCGCGGTGGCCAGCCGCAATGGCGCGGG
CATTCTCCGCAACGCTGGCAGCAACACGGTGGGCAGGATCGTCCGCGGCACCGGGGCCAGCAGGGCGGGGCG
CCTCGCTGGCGCAACTGA
Translation:
MWRTFLRVPLLLLLASLGGCAVYDYDYDDGDWRRYRGQPYAYEVPRYRVYDDGWRSERRYYSTRYYDQRYYP
APRRYDGHRDYRREQYRYPQRHHESRPAHRGERHPGNWQRGGQPQWRGHSPQRWQQHGGQDRPRHRGQQGGA
PRWRN*
AnnotationID:4368GeneID:4362
AnnotatorUID: danlee
Modification Date/Time: 2004-03-26 16:04:41
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0737
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8725




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25868




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4362
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6696
                           PA0737_tr
                           translation of PA0737
                           151
                           94.03
                           95.36
                           2
                           830.0
     

     
     
180023
                           gb|AAG04126.1|AE004509_1
                           (AE004509) hypothetical protein PA0737 [Pseudomonas aeruginosa PAO1]
                           151
                           94.03
                           95.36
                           2
                           830.0
     

     






      

          
GC ORFID: 47364How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0737Glimmer Score: 

          
Start: 100616Stop: 101065

          
Length: 450


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0737 translation of PA0737Homolog Bit Score 323.0

          
Other Homologs:  t_PA0737 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTGGCGCACATTCCTGAGAGTCCCGCTTCTTCTGCTTCTCGCCAGCCTGGGTGGCTGCGCGGTGTATGAC 
TACGACTACGATGACGGCGACTGGCGCCGCTATCGCGGCCAGCCCTACGCCTACGAAGTGCCGCGCTATCGC 
GTCTACGACGATGGCTGGCGTAGCGAACGGCGCTACTACTCGACGCGCTACTACGACCAACGCTACTACCCG 
GCGCCACGCCGCTACGATGGCCACCGCGACTACCGGCGCGAGCAATATCGCTACCCGCAGCGCCACCACGAA 
TCGCGCCCGGCCCATCGCGGCGAGCGGCATCCGGGCAACTGGCAGCGCGGTGGCCAGCCGCAATGGCGCGGG 
CATTCTCCGCAACGCTGGCAGCAACACGGTGGGCAGGATCGTCCGCGGCACCGGGGCCAGCAGGGCGGGGCG 
CCTCGCTGGCGCAACTGA