ViewGene
Locus Name:
GeneID:
Location:

GeneID:4361
TrivialName: PA14_06250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06250
PAO1 Ortholog Locus:PA0478
Sequence Length:477
Protein Length:158
Start: 552030
Stop: 552506
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03867.1|AE004485_8 (AE004485) probable N-acetyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 158/158 (100%), Positives = 158/158 (100%)
Sequence:
ATGACTCTCGAAATCCGTCCCGCCGTACCGGCCGACGCCGAACAGATCCTTGCCTTCATCATCGAACTGGCC
GACTACGAGCGCGCCCGCCACGAGGTGGTCACCGATGTCGAAGGCATCCGCCGCAGCCTGTTCGCCGAAGGC
TCGCCGACCCGCGCGCTGATGTGCCTGAGCGAAGGCCGGCCGATCGGCTATGCGGTGTATTTCTACAGCTAC
TCGACCTGGCTGGGGCGCAACGGCATCTACCTCGAAGACCTCTACGTCACCCCTGAGTACCGTGGCGTCGGC
GCCGGTCGCCGGCTGCTCCGCGAGCTGGCCCGCGAGGCCGTGGCCAACGACTGCGGACGCCTGGAGTGGAGC
GTGCTGGACTGGAACCAGCCGGCCATCGACTTCTACCGCTCCATCGGCGCGCTGCCGCAGGACGAGTGGGTG
CGCTACCGGCTGGATGGCGAGGCGTTGCGCAAGATGGCGGAGTAG
Translation:
MTLEIRPAVPADAEQILAFIIELADYERARHEVVTDVEGIRRSLFAEGSPTRALMCLSEGRPIGYAVYFYSY
STWLGRNGIYLEDLYVTPEYRGVGAGRRLLRELAREAVANDCGRLEWSVLDWNQPAIDFYRSIGALPQDEWV
RYRLDGEALRKMAE*
AnnotationID:4367GeneID:4361
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 17:05:55
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase, GNAT family
Cell Localization:()
Synonyms:PA0478
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55953.1| (AE016864) acetyltransferase, GNAT family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 161

 Score =  241 bits (614), Expect = 1e-63
 Identities = 115/157 (73%), Positives = 128/157 (81%)

>gb|AAN69009.1|AE016533_1 (AE016786) acetyltransferase, GNAT family [Pseudomonas putida
           KT2440]
          Length = 159

 Score =  236 bits (601), Expect = 5e-62
 Identities = 114/157 (72%), Positives = 128/157 (81%)






 
Structural Features:
pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. 
CD-Length = 82 residues,  91.5% aligned
Score = 64.5 bits (157), Expect = 5e-12
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 3/78 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8723




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25866




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33798




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4361_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4361
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6695
                           PA0478_tr
                           translation of PA0478
                           158
                           99.99
                           99.99
                           0
                           827.0
     

     
     
180005
                           gb|AAG03867.1|AE004485_8
                           (AE004485) probable N-acetyltransferase [Pseudomonas aeruginosa PAO1]
                           158
                           99.99
                           99.99
                           0
                           827.0
     

     
     
180007
                           gb|AAN69009.1|AE016533_1
                           (AE016786) acetyltransferase, GNAT family [Pseudomonas putida KT2440]
                           159
                           71.69
                           80.50
                           1
                           601.0
     

     
     
180006
                           gb|AAO55953.1|
                           (AE016864) acetyltransferase, GNAT family [Pseudomonas syringae pv. tomato str. DC3000]
                           161
                           71.42
                           79.50
                           3
                           614.0
     

     
     
180008
                           gb|AAQ60822.1|
                           (AE016921) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           165
                           61.81
                           70.30
                           7
                           533.0
     

     






      

          
GC ORFID: 47363How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0478Glimmer Score: 

          
Start: 6353372Stop: 6353848

          
Length: 477


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0478 translation of PA0478Homolog Bit Score 323.0

          
Other Homologs:  t_PA0478 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTCTCGAAATCCGTCCCGCCGTACCGGCCGACGCCGAACAGATCCTTGCCTTCATCATCGAACTGGCC 
GACTACGAGCGCGCCCGCCACGAGGTGGTCACCGATGTCGAAGGCATCCGCCGCAGCCTGTTCGCCGAAGGC 
TCGCCGACCCGCGCGCTGATGTGCCTGAGCGAAGGCCGGCCGATCGGCTATGCGGTGTATTTCTACAGCTAC 
TCGACCTGGCTGGGGCGCAACGGCATCTACCTCGAAGACCTCTACGTCACCCCTGAGTACCGTGGCGTCGGC 
GCCGGTCGCCGGCTGCTCCGCGAGCTGGCCCGCGAGGCCGTGGCCAACGACTGCGGACGCCTGGAGTGGAGC 
GTGCTGGACTGGAACCAGCCGGCCATCGACTTCTACCGCTCCATCGGCGCGCTGCCGCAGGACGAGTGGGTG 
CGCTACCGGCTGGATGGCGAGGCGTTGCGCAAGATGGCGGAGTAG