ViewGene

Locus Name:
GeneID:
Location:

GeneID:4360
TrivialName: PA14_72360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72360
PAO1 Ortholog Locus:PA5481
Sequence Length:468
Protein Length:155
Start: 6445608
Stop: 6445141
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08866.1|AE004961_1 (AE004961) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 155/155 (100%), Positives = 155/155 (100%)
Sequence:
ATGCGACTCATGCGTAACCTGATGAACGCACTGCTGCTCGGTGCCGCCGCCAGTTCGCTGGCGGTGGCGGCC
GACAGGGACGGCGAATACCGCTTGAACGAATTGCAGAGCACCGATGCCGGATACCGCAAGGCCTGGCAGAAC
CTGGTGGAAGACGAGAGCCGCTTGCCCGACTGGGTGATGAATCTCTCGGGAACCGCTACGCCGATGCATGCC
GTCGACGACCAGGGCGACAAGTATCTGGTTGGCGGTCTCTGCGAGAAGTCCGATTGCAAGGGCCAGCGCCTG
CTGGTCGCCTTCGATTGGGACAAGAGTCATGCCTACGGGCTCTACGTGCAGGTGCCCGAAGGGCTGCCGCAG
GACAAGTCGCCGAGCAAGCACGCCAGCTTCCGCTGGCTGGGCAAGCCGGAGCCGGCGGTACAGAAGATCCTC
GACGAACAACTCAAGGCCGATCCGAACTGGTACTGA
Translation:
MRLMRNLMNALLLGAAASSLAVAADRDGEYRLNELQSTDAGYRKAWQNLVEDESRLPDWVMNLSGTATPMHA
VDDQGDKYLVGGLCEKSDCKGQRLLVAFDWDKSHAYGLYVQVPEGLPQDKSPSKHASFRWLGKPEPAVQKIL
DEQLKADPNWY*
AnnotationID:4366GeneID:4360
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 07:07:34
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5481
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:8721
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25864
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4360

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6694 PA5481_tr translation of PA5481 155 99.99 99.99 0 827.0
180002 gb|AAG08866.1|AE004961_1 (AE004961) hypothetical protein PA5481 [Pseudomonas aeruginosa PAO1] 155 99.99 99.99 0 827.0
180003 gb|AAN65770.1|AE016203_3 (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440] 159 52.20 72.32 7 450.0
180004 gb|AAO53875.1| (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 158 51.26 68.35 6 412.0
GC ORFID: 47362How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5481Glimmer Score:
Start: 5709297Stop: 5708830
Length: 468
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5481 translation of PA5481Homolog Bit Score 323.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3906 (ORF: BLASTX 162.0), t_PA5481 (ORF: GLIMMER)
GC ORF Sequence
ATGCGACTCATGCGTAACCTGATGAACGCACTGCTGCTCGGTGCCGCCGCCAGTTCGCTGGCGGTGGCGGCC
GACAGGGACGGCGAATACCGCTTGAACGAATTGCAGAGCACCGATGCCGGATACCGCAAGGCCTGGCAGAAC
CTGGTGGAAGACGAGAGCCGCTTGCCCGACTGGGTGATGAATCTCTCGGGAACCGCTACGCCGATGCATGCC
GTCGACGACCAGGGCGACAAGTATCTGGTTGGCGGTCTCTGCGAGAAGTCCGATTGCAAGGGCCAGCGCCTG
CTGGTCGCCTTCGATTGGGACAAGAGTCATGCCTACGGGCTCTACGTGCAGGTGCCCGAAGGGCTGCCGCAG
GACAAGTCGCCGAGCAAGCACGCCAGCTTCCGCTGGCTGGGCAAGCCGGAGCCGGCGGTACAGAAGATCCTC
GACGAACAACTCAAGGCCGATCCGAACTGGTACTGA