ViewGene
Locus Name:
GeneID:
Location:

GeneID:436
TrivialName: PA14_69340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69340
PAO1 Ortholog Locus:PA5252
Sequence Length:1917
Protein Length:638
Start: 6186734
Stop: 6184818
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08637.1|AE004937_9 (AE004937) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 634/638 (99%), Positives = 636/638 (99%)
Sequence:
ATGATCCGACTCCTCAATCTTACGCTACAGCGCGGGCCGCAGCGCCTCCTGGAAGCTGTTGAACTGACCCTG
CACGCCGGCCAGAAAGCCGGTCTCATCGGGGCCAATGGCGCTGGCAAGTCCAGCTTGTTCGCGCTGTTGCGC
GGCCAGCTCGGCCAGGATGCCGGCGACTGCCTGTTGCCCGCCGACTGGCGCATCGCGCACATGCGCCAGGAG
GTCGATACCCTGGATCGCCTGGCGGTGGATTACGTGCTCGACGGCGACAGTCGCCTGCGCGAGATCCAGGCG
GCACTGGCCGCCGCCGAAGCGGCGCACGACGGTTCTGCCCTGGCGCGCCTGCATACCGAACTGGACAACGCC
GACGGTTACACCGCCGATGCACGGGCGCGCAAGCTGCTGGCCGGGCTCGGCTTCAGCAGCGAGCAGATGGAG
CGCCGGGTCGGTGATTTCTCCGGCGGTTGGAGGATGCGCCTGAACCTGGCGCAGGCGCTGATGTGCCCGTCC
GACCTGCTGTTGCTCGACGAGCCGACCAACCACCTCGACCTGGACGCCATCCTCTGGCTGGAAGAGTGGCTC
AAGGGTTATCCCGGCACTCTGGTGCTGATCTCCCACGACCGCGACTTCCTCGATGCGGTGGTGGACCACGTG
GTGCATCTGGAAAACCGCAAGCTGACCCTCTACCGCGGCGGCTATTCCGCTTTCGAGCGGACCCGCGCCGAG
CGGCTGGCTCAGCAACAGCAGGCCTACGAGAAACAGCAGGCGCAGCGTGCGCACATGGAAAGCTTCATCGCC
CGCTTCAAGGCCAAGGCCACCAAGGCGCGCCAGGCGCAGAGCCGGATCAAGGCGCTGGAGCGTCTCGAGGAA
CTGGCGCCGGCACATGTCGATTCGCCGTTCAATTTCAGTTTCCGCGAGTCGGACAAGATCTCCCGGCCGTTG
CTGGATCTCGGCGAAGGCCGTCTCGGCTATGGCGACAAGGCGGTGCTGGAGAAGGTCAAGCTGCAACTGGTG
CCCGGTGCGCGGATCGGCCTGCTCGGTCCCAACGGTGCCGGCAAGTCGACCCTGATCAAGACCCTGGCCGGG
GACCTGCCCGAATTGGGCGGCCGCCTGCTGCGCGGCGAGAACCTGGCCATCGGATACTTCGCCCAGCACCAG
CTCGATTCGCTGGACCCACAGGCCAGCCCGTTGCTGCATCTGCAGCGTATCGCCCCCGGCGAGCGCGAACAG
ACCCTCAAGGACTTCCTTGGCGGCTTCGACTTCCGCGGCGTTCGGGTGGACGAGCCGGTATTGAACTTCTCC
GGTGGTGAGAAAGCGCGCCTGGCCCTGGCGCTGATCGCCTGGCAGAAGCCCAACCTGCTGCTGCTCGACGAG
CCGACCAACCACCTCGACCTGGAAATGCGCCTGGCCCTGACCTTGGCTCTACAGGAGTTTTCCGGGGCGGTC
CTGGTGGTTTCCCACGACCGGCACCTGCTCAAAAGCACCACCGACGAATTCCTCCTGGTCGCCGATGGGCGC
GTGGTGCCGTTCGATGGCGATCTCGACGATTACGCCCGCTGGCTGGTCGACTATCGCGCGCGCAAGGCGCCG
CAGGCCGAGACTGCGCCGGGCGCGCCGTCCGAACGCACCGACAAGCGCGCCCAGCGCCAGGCAGCGGCCGCG
CTGCGCCAGCAGCTGGCGCCGCACAAGCGCGAGGCCGACAAGCTGGAGCGCGAACTCGGCGGCCTGCACGAA
AAGCTAGCCGCTATCGAGGCGCGGCTGGGCGACAGCGCCCTGTACGACGTATCGCGAAAGGACGAATTGCGC
GAGTTGCTGTCCGAACAATCGAGCCTGAAGGTTCGCGAAGGCGAGCTGGAGGAACGTTGGCTGGAGGCCCTG
GAAACCCTCGAAGCCTTGCAGAAAGAACTGGAGGCCAGTGAGTGA
Translation:
MIRLLNLTLQRGPQRLLEAVELTLHAGQKAGLIGANGAGKSSLFALLRGQLGQDAGDCLLPADWRIAHMRQE
VDTLDRLAVDYVLDGDSRLREIQAALAAAEAAHDGSALARLHTELDNADGYTADARARKLLAGLGFSSEQME
RRVGDFSGGWRMRLNLAQALMCPSDLLLLDEPTNHLDLDAILWLEEWLKGYPGTLVLISHDRDFLDAVVDHV
VHLENRKLTLYRGGYSAFERTRAERLAQQQQAYEKQQAQRAHMESFIARFKAKATKARQAQSRIKALERLEE
LAPAHVDSPFNFSFRESDKISRPLLDLGEGRLGYGDKAVLEKVKLQLVPGARIGLLGPNGAGKSTLIKTLAG
DLPELGGRLLRGENLAIGYFAQHQLDSLDPQASPLLHLQRIAPGEREQTLKDFLGGFDFRGVRVDEPVLNFS
GGEKARLALALIAWQKPNLLLLDEPTNHLDLEMRLALTLALQEFSGAVLVVSHDRHLLKSTTDEFLLVADGR
VVPFDGDLDDYARWLVDYRARKAPQAETAPGAPSERTDKRAQRQAAAALRQQLAPHKREADKLERELGGLHE
KLAAIEARLGDSALYDVSRKDELRELLSEQSSLKVREGELEERWLEALETLEALQKELEASE*
AnnotationID:445GeneID:436
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 07:07:41
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:PA5252
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0488
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65829.1|AE016211_7 (AE016774) ABC transporter, ATP-binding protein, putative
           [Pseudomonas putida KT2440]
          Length = 636

 Score = 1053 bits (2723), Expect = 0.0
 Identities = 528/636 (83%), Positives = 581/636 (91%), Gaps = 2/636 (0%)

>gb|AAO53692.1| (AE016856) ABC transporter, ATP-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 651

 Score = 1038 bits (2685), Expect = 0.0
 Identities = 521/636 (81%), Positives = 573/636 (90%), Gaps = 2/636 (0%)

>emb|CAD84388.1| (BX321857) ATPase components of ABC transporters with duplicated
           ATPase domains [Nitrosomonas europaea ATCC 19718]
          Length = 636

 Score =  882 bits (2278), Expect = 0.0
 Identities = 448/636 (70%), Positives = 522/636 (82%), Gaps = 6/636 (0%)








 
Structural Features:
COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains 
CD-Length = 530 residues,  99.6% aligned
Score =  519 bits (1338), Expect = 4e-148
Identities = 247/532 (46%), Positives = 327/532 (61%), Gaps = 14/532 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:875




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18017




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34818




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:436_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:436
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
743
                           PA5252_tr
                           translation of PA5252
                           638
                           99.37
                           99.68
                           0
                           3210.0
     

     
     
33091
                           gb|AAG08637.1|AE004937_9
                           (AE004937) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           638
                           99.37
                           99.68
                           0
                           3210.0
     

     
     
33092
                           gb|AAN65829.1|AE016211_7
                           (AE016774) ABC transporter, ATP-binding protein, putative [Pseudomonas putida KT2440]
                           638
                           82.75
                           91.06
                           2
                           2725.0
     

     
     
33093
                           gb|AAO53692.1|
                           (AE016856) ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           653
                           79.78
                           87.74
                           17
                           2685.0
     

     
     
33094
                           emb|CAD84388.1|
                           (BX321857) ATPase components of ABC transporters with duplicated ATPase domains [Nitrosomonas europaea ATCC 19718]
                           640
                           70.00
                           81.56
                           6
                           2280.0
     

     






      

          
GC ORFID: 43438How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5252Glimmer Score: 

          
Start: 5450421Stop: 5448505

          
Length: 1917


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5252 translation of PA5252Homolog Bit Score 1241.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4074 (ORF: BLASTX 1041.0), t_PA5252 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCGACTCCTCAATCTTACGCTACAGCGCGGGCCGCAGCGCCTCCTGGAAGCTGTTGAACTGACCCTG 
CACGCCGGCCAGAAAGCCGGTCTCATCGGGGCCAATGGCGCTGGCAAGTCCAGCTTGTTCGCGCTGTTGCGC 
GGCCAGCTCGGCCAGGATGCCGGCGACTGCCTGTTGCCCGCCGACTGGCGCATCGCGCACATGCGCCAGGAG 
GTCGATACCCTGGATCGCCTGGCGGTGGATTACGTGCTCGACGGCGACAGTCGCCTGCGCGAGATCCAGGCG 
GCACTGGCCGCCGCCGAAGCGGCGCACGACGGTTCTGCCCTGGCGCGCCTGCATACCGAACTGGACAACGCC 
GACGGTTACACCGCCGATGCACGGGCGCGCAAGCTGCTGGCCGGGCTCGGCTTCAGCAGCGAGCAGATGGAG 
CGCCGGGTCGGTGATTTCTCCGGCGGTTGGAGGATGCGCCTGAACCTGGCGCAGGCGCTGATGTGCCCGTCC 
GACCTGCTGTTGCTCGACGAGCCGACCAACCACCTCGACCTGGACGCCATCCTCTGGCTGGAAGAGTGGCTC 
AAGGGTTATCCCGGCACTCTGGTGCTGATCTCCCACGACCGCGACTTCCTCGATGCGGTGGTGGACCACGTG 
GTGCATCTGGAAAACCGCAAGCTGACCCTCTACCGCGGCGGCTATTCCGCTTTCGAGCGGACCCGCGCCGAG 
CGGCTGGCTCAGCAACAGCAGGCCTACGAGAAACAGCAGGCGCAGCGTGCGCACATGGAAAGCTTCATCGCC 
CGCTTCAAGGCCAAGGCCACCAAGGCGCGCCAGGCGCAGAGCCGGATCAAGGCGCTGGAGCGTCTCGAGGAA 
CTGGCGCCGGCACATGTCGATTCGCCGTTCAATTTCAGTTTCCGCGAGTCGGACAAGATCTCCCGGCCGTTG 
CTGGATCTCGGCGAAGGCCGTCTCGGCTATGGCGACAAGGCGGTGCTGGAGAAGGTCAAGCTGCAACTGGTG 
CCCGGTGCGCGGATCGGCCTGCTCGGTCCCAACGGTGCCGGCAAGTCGACCCTGATCAAGACCCTGGCCGGG 
GACCTGCCCGAATTGGGCGGCCGCCTGCTGCGCGGCGAGAACCTGGCCATCGGATACTTCGCCCAGCACCAG 
CTCGATTCGCTGGACCCACAGGCCAGCCCGTTGCTGCATCTGCAGCGTATCGCCCCCGGCGAGCGCGAACAG 
ACCCTCAAGGACTTCCTTGGCGGCTTCGACTTCCGCGGCGTTCGGGTGGACGAGCCGGTATTGAACTTCTCC 
GGTGGTGAGAAAGCGCGCCTGGCCCTGGCGCTGATCGCCTGGCAGAAGCCCAACCTGCTGCTGCTCGACGAG 
CCGACCAACCACCTCGACCTGGAAATGCGCCTGGCCCTGACCTTGGCTCTACAGGAGTTTTCCGGGGCGGTC 
CTGGTGGTTTCCCACGACCGGCACCTGCTCAAAAGCACCACCGACGAATTCCTCCTGGTCGCCGATGGGCGC 
GTGGTGCCGTTCGATGGCGATCTCGACGATTACGCCCGCTGGCTGGTCGACTATCGCGCGCGCAAGGCGCCG 
CAGGCCGAGACTGCGCCGGGCGCGCCGTCCGAACGCACCGACAAGCGCGCCCAGCGCCAGGCAGCGGCCGCG 
CTGCGCCAGCAGCTGGCGCCGCACAAGCGCGAGGCCGACAAGCTGGAGCGCGAACTCGGCGGCCTGCACGAA 
AAGCTAGCCGCTATCGAGGCGCGGCTGGGCGACAGCGCCCTGTACGACGTATCGCGAAAGGACGAATTGCGC 
GAGTTGCTGTCCGAACAATCGAGCCTGAAGGTTCGCGAAGGCGAGCTGGAGGAACGTTGGCTGGAGGCCCTG 
GAAACCCTCGAAGCCTTGCAGAAAGAACTGGAGGCCAGTGAGTGA