ViewGene

Locus Name:
GeneID:
Location:

GeneID:4359
TrivialName: PA14_67720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67720
PAO1 Ortholog Locus:PA5128
Sequence Length:492
Protein Length:163
Start: 6049260
Stop: 6048769
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08513.1|AE004926_3 (AE004926) secretion protein SecB [Pseudomonas aeruginosa PAO1]
Identities = 163/163 (100%), Positives = 163/163 (100%)
Sequence:
ATGACCGAGCAAGCTACCAACGGCGCTGCCGACGAGCAGCAACCCCAGTTCTCCCTGCAGCGCATCTACCTG
CGCGACCTGTCGTTCGAGTCGCCGAAGTCCCCGGAAATCTTCCGCCAGGAATGGAACCCGTCCATCAGCCTG
GACCTGAACACTCGCCAGAAGCAGCTGGACGGCGACTTCTACGAAGTGGTCCTGACCGTATCGGTGACCGTG
AAGAACGGCGAGGACACCACTGCCTTCATCGCCGAAGTGCAGCAGGCCGGCATCTTCCTGATCAAGAACCTC
GATCCGTCGAGCATGAGCCATACCCTCGGCGCGTTCTGCCCGAACATCCTCTTCCCGTACGCTCGCGAAGCC
CTGGACAACCTGGTGGTACGCGGTTCGTTCCCGGCGCTGATGCTGTCGCCGGTGAACTTCGACGCCCTCTAC
GCCCAGGAAATCGCCCGCATGCAGGCCTCCGGCGAGATCCCGACGCCGTCGGTCCAGTAA
Translation:
MTEQATNGAADEQQPQFSLQRIYLRDLSFESPKSPEIFRQEWNPSISLDLNTRQKQLDGDFYEVVLTVSVTV
KNGEDTTAFIAEVQQAGIFLIKNLDPSSMSHTLGAFCPNILFPYAREALDNLVVRGSFPALMLSPVNFDALY
AQEIARMQASGEIPTPSVQ*
AnnotationID:4365GeneID:4359
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 12:12:48
Gene Name:secB
Confidence Code:2
GeneProduct:secretion protein SecB
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:preprotein translocase subunit SecB
Functional Category Confidence Code:5
COGs:COG1952,cd00557
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58750.1| (AE016875) protein-export protein SecB [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 164

 Score =  258 bits (659), Expect = 1e-68
 Identities = 129/165 (78%), Positives = 145/165 (87%), Gaps = 3/165 (1%)

>gb|AAN70618.1|AE016704_9 (AE016793) protein-transport protein SecB [Pseudomonas putida
           KT2440]
          Length = 161

 Score =  254 bits (650), Expect = 1e-67
 Identities = 128/160 (80%), Positives = 143/160 (89%), Gaps = 2/160 (1%)

>gb|AAN53139.1|AE015457_1 (AE015457) protein-export protein SecB [Shewanella oneidensis MR-1]
          Length = 157

 Score =  180 bits (456), Expect = 3e-45
 Identities = 87/154 (56%), Positives = 119/154 (77%), Gaps = 4/154 (2%)

Structural Features:
COG1952, SecB, Preprotein translocase subunit SecB 
[Intracellular trafficking and secretion]
CD-Length = 157 residues,  94.9% aligned
Score =  200 bits (510), Expect = 6e-53
Identities = 85/150 (56%), Positives = 107/150 (71%), Gaps = 1/150 (0%)

cd00557, Translocase_SecB, Preprotein translocase subunit SecB. 
CD-Length = 131 residues, 100.0% aligned
Score =  139 bits (351), Expect = 2e-34
Identities = 59/131 (45%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
Genomic Context:
Comment:
ReferenceID:8719
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25862
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34953
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4359_cdd.html
URL:
ReferenceID:35793
Author/Investigator(s): Kumamoto CA, Nault AK.
Title: Characterization of the Escherichia coli protein-export gene secB.
PubMed: 2656409
MedLine:
Source:
Gene. 1989 Jan 30;75(1):167-75.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2656409
Homologs By Global Alignment
Gene ID:4359

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6693 PA5128_tr translation of PA5128 163 99.99 99.99 0 829.0
179963 gb|AAG08513.1|AE004926_3 (AE004926) secretion protein SecB [Pseudomonas aeruginosa PAO1] 163 99.99 99.99 0 829.0
179965 gb|AAN70618.1|AE016704_9 (AE016793) protein-transport protein SecB [Pseudomonas putida KT2440] 164 79.26 88.41 4 652.0
179964 gb|AAO58750.1| (AE016875) protein-export protein SecB [Pseudomonas syringae pv. tomato str. DC3000] 165 78.18 87.87 3 663.0
179966 gb|AAK38717.1|AF359453_3 (AF359453) protein-transport protein [Pseudomonas fluorescens] 164 75.00 84.14 5 611.0
GC ORFID: 47361How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5128Glimmer Score:
Start: 5312945Stop: 5312454
Length: 492
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA5128 translation of PA5128Homolog Bit Score 323.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6495 (ORF: BLASTX 252.0), t_PA5128 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGAGCAAGCTACCAACGGCGCTGCCGACGAGCAGCAACCCCAGTTCTCCCTGCAGCGCATCTACCTG
CGCGACCTGTCGTTCGAGTCGCCGAAGTCCCCGGAAATCTTCCGCCAGGAATGGAACCCGTCCATCAGCCTG
GACCTGAACACTCGCCAGAAGCAGCTGGACGGCGACTTCTACGAAGTGGTCCTGACCGTATCGGTGACCGTG
AAGAACGGCGAGGACACCACTGCCTTCATCGCCGAAGTGCAGCAGGCCGGCATCTTCCTGATCAAGAACCTC
GATCCGTCGAGCATGAGCCATACCCTCGGCGCGTTCTGCCCGAACATCCTCTTCCCGTACGCTCGCGAAGCC
CTGGACAACCTGGTGGTACGCGGTTCGTTCCCGGCGCTGATGCTGTCGCCGGTGAACTTCGACGCCCTCTAC
GCCCAGGAAATCGCCCGCATGCAGGCCTCCGGCGAGATCCCGACGCCGTCGGTCCAGTAA