ViewGene
Locus Name:
GeneID:
Location:

GeneID:4357
TrivialName: PA14_15120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15120
PAO1 Ortholog Locus:PA3785
Sequence Length:477
Protein Length:158
Start: 1282296
Stop: 1282772
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07172.1|AE004797_7 (AE004797) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/158 (99%), Positives = 158/158 (100%)
Sequence:
ATGCGCACATCCTTCTTCGCTGCCGCGGCCCTGCTGGCCGTTTCCGCTTTCGCCCAGGCCCACGAGTACAGC
GCCGGCCAACTGCACATCGAGCATCCCTGGGCGCTGGCCCTGCCGCCGACCTCGCCGAACGGCGCGGCCTAC
TTCGTGGTGCAGAACCACGGCAAGGAAAACGACACCCTGCTTGGCGCCGACACGCCGCGCGCGGCTTCCGCC
GAGGTGCACGAGCATGTGCACAAGAACGGCATGATGAGCATGCAGAAAGTCGACAGCGTCGACGTCGCACCA
GGCAAGGACCTGCGCTTCGCTCCCGGCGGCTACCACCTGATGCTGATGGGCCTGAAGCAGCCACTGGTGGCC
GGCGAGCGCTTCCCGCTGACGCTGCATTTCCGCAAGGCCGGCGACGTGCCGGTGGAAATCGTCGTCGAGTCC
AAGGCGCCGGCCGAACAGGGCGGGCACGAGCAGCACGGCCACTGA
Translation:
MRTSFFAAAALLAVSAFAQAHEYSAGQLHIEHPWALALPPTSPNGAAYFVVQNHGKENDTLLGADTPRAASA
EVHEHVHKNGMMSMQKVDSVDVAPGKDLRFAPGGYHLMLMGLKQPLVAGERFPLTLHFRKAGDVPVEIVVES
KAPAEQGGHEQHGH*
AnnotationID:4363GeneID:4357
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 18:06:52
Gene Name:
Confidence Code:3
GeneProduct:putative membrane or periplasmic protein
Cell Localization:()
Synonyms:PA3785
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04314
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam04314, DUF461, Protein of unknown function (DUF461). 
Putative membrane or periplasmic protein.
CD-Length = 117 residues, 100.0% aligned
Score =  145 bits (368), Expect = 4e-36
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 1/117 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:8715




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25858




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31770




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4357_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4357
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6691
                           PA3785_tr
                           translation of PA3785
                           158
                           99.36
                           99.99
                           0
                           828.0
     

     
     
179823
                           gb|AAG07172.1|AE004797_7
                           (AE004797) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           158
                           99.36
                           99.99
                           0
                           828.0
     

     
     
179824
                           gb|AAN70405.1|AE016682_7
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           164
                           54.26
                           65.85
                           9
                           437.0
     

     
     
179826
                           gb|AAQ62023.1|
                           (AE016925) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           160
                           50.62
                           63.12
                           11
                           399.0
     

     
     
179825
                           gb|AAO58310.1|
                           (AE016873) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           160
                           48.75
                           65.62
                           9
                           413.0
     

     






      

          
GC ORFID: 47359How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3785Glimmer Score: 

          
Start: 3671641Stop: 3671165

          
Length: 477


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3785 translation of PA3785Homolog Bit Score 323.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5792 (ORF: BLASTX 151.0), t_PA3785 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCACATCCTTCTTCGCTGCCGCGGCCCTGCTGGCCGTTTCCGCTTTCGCCCAGGCCCACGAGTACAGC 
GCCGGCCAACTGCACATCGAGCATCCCTGGGCGCTGGCCCTGCCGCCGACCTCGCCGAACGGCGCGGCCTAC 
TTCGTGGTGCAGAACCACGGCAAGGAAAACGACACCCTGCTTGGCGCCGACACGCCGCGCGCGGCTTCCGCC 
GAGGTGCACGAGCATGTGCACAAGAACGGCATGATGAGCATGCAGAAAGTCGACAGCGTCGACGTCGCACCA 
GGCAAGGACCTGCGCTTCGCTCCCGGCGGCTACCACCTGATGCTGATGGGCCTGAAGCAGCCACTGGTGGCC 
GGCGAGCGCTTCCCGCTGACGCTGCATTTCCGCAAGGCCGGCGACGTGCCGGTGGAAATCGTCGTCGAGTCC 
AAGGCGCCGGCCGAACAGGGCGGGCACGAGCAGCACGGCCACTGA