ViewGene
Locus Name:
GeneID:
Location:

GeneID:4356
TrivialName: PA14_17170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17170
PAO1 Ortholog Locus:PA3647
Sequence Length:507
Protein Length:168
Start: 1472999
Stop: 1473505
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07035.1|AE004784_8 (AE004784) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 168/168 (100%), Positives = 168/168 (100%)
Sequence:
GTGCGTAAGTTCACCCAGTTCGTCCTGATCACCGCAGCCATCATGGCGGCTCCTTCGGCGTTCGCTGAAATG
AAGATCGCGGTGCTCAACTACCAGATGGCGCTGCTCGAGTCCGATGCCGCCAAGCAATACGCCGTGGATGCC
GAGAAGAAGTTCGGCCCCCAGCTGAACAAGCTGAAGAACCTCGAACGCGACGCCAAGGCGCTGCAGGACAAG
CTGGTTTCCAACGGCAGCAAGATGTCCCAGGGCGACCGCGAGAAGGCCGAGCTGGACTTCAAGCAGAAGGCC
CGTGACTTCCAGTTCCAGTCCAAGGAACTGAACGAGTCGAAGGCCGCCGCCGACCGCGACATGCTGAAGAAG
CTCAAGCCGAAGCTGGACCAGGCCGTCGAGGAAACCATCAAGAAAGGCGGCTACGACATGGTCATCGAGCGT
GGCGCCGTGGTCGACGTCAAGCCGCAATACGACATCACCCGCCAGGTGATCGAGCGGATGAACCAGCTGCGT
TGA
Translation:
MRKFTQFVLITAAIMAAPSAFAEMKIAVLNYQMALLESDAAKQYAVDAEKKFGPQLNKLKNLERDAKALQDK
LVSNGSKMSQGDREKAELDFKQKARDFQFQSKELNESKAAADRDMLKKLKPKLDQAVEETIKKGGYDMVIER
GAVVDVKPQYDITRQVIERMNQLR*
AnnotationID:4362GeneID:4356
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 05:05:51
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein OmpH,
Cell Localization:()
Synonyms:ompH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03938,COG2825
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55063.1| (AE016861) outer membrane protein OmpH, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 167

 Score =  260 bits (664), Expect = 3e-69
 Identities = 130/168 (77%), Positives = 151/168 (89%), Gaps = 1/168 (0%)

>gb|AAN67221.1|AE016349_2 (AE016779) outer membrane protein OmpH [Pseudomonas putida KT2440]
          Length = 167

 Score =  258 bits (658), Expect = 1e-68
 Identities = 129/168 (76%), Positives = 147/168 (87%), Gaps = 1/168 (0%)








 
Structural Features:
pfam03938, OmpH, Outer membrane protein (OmpH-like).
CD-Length = 167 residues, 100.0% aligned
Score =  115 bits (290), Expect = 4e-27
Identities = 57/167 (34%), Positives = 94/167 (56%), Gaps = 2/167 (1%)

COG2825, HlpA, Outer membrane protein 
[Cell envelope biogenesis, outer membrane]
CD-Length = 170 residues,  98.2% aligned
Score = 93.1 bits (231), Expect = 3e-20
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 3/168 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15070




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25856




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31896




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4356_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4356
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6690
                           PA3647_tr
                           translation of PA3647
                           168
                           99.99
                           99.99
                           0
                           827.0
     

     
     
179820
                           gb|AAG07035.1|AE004784_8
                           (AE004784) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           168
                           99.40
                           99.99
                           0
                           824.0
     

     
     
179821
                           gb|AAO55063.1|
                           (AE016861) outer membrane protein OmpH, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           168
                           76.78
                           89.88
                           1
                           662.0
     

     
     
179822
                           gb|AAN67221.1|AE016349_2
                           (AE016779) outer membrane protein OmpH [Pseudomonas putida KT2440]
                           168
                           76.19
                           87.50
                           1
                           656.0
     

     






      

          
GC ORFID: 47358How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3647Glimmer Score: 

          
Start: 3480938Stop: 3480432

          
Length: 507


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3647 translation of PA3647Homolog Bit Score 323.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4628 (ORF: BLASTX 259.0), t_PA3647 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGTAAGTTCACCCAGTTCGTCCTGATCACCGCAGCCATCATGGCGGCTCCTTCGGCGTTCGCTGAAATG 
AAGATCGCGGTGCTCAACTACCAGATGGCGCTGCTCGAGTCCGATGCCGCCAAGCAATACGCCGTGGATGCC 
GAGAAGAAGTTCGGCCCCCAGCTGAACAAGCTGAAGAACCTCGAACGCGACGCCAAGGCGCTGCAGGACAAG 
CTGGTTTCCAACGGCAGCAAGATGTCCCAGGGCGACCGCGAGAAGGCCGAGCTGGACTTCAAGCAGAAGGCC 
CGTGACTTCCAGTTCCAGTCCAAGGAACTGAACGAGTCGAAGGCCGCCGCCGACCGCGACATGCTGAAGAAG 
CTCAAGCCGAAGCTGGACCAGGCCGTCGAGGAAACCATCAAGAAAGGCGGCTACGACATGGTCATCGAGCGT 
GGCGCCGTGGTCGACGTCAAGCCGCAATACGACATCACCCGCCAGGTGATCGAGCGGATGAACCAGCTGCGT 
TGA