ViewGene
Locus Name:
GeneID:
Location:

GeneID:4355
TrivialName: PA14_30160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30160
PAO1 Ortholog Locus:PA2625
Sequence Length:471
Protein Length:156
Start: 2612437
Stop: 2611967
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06013.1|AE004691_4 (AE004691) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 156/156 (100%), Positives = 156/156 (100%)
Sequence:
ATGAGCTGGCATCCCCATGTCACCGTAGCGACCATCGTCGAGGACCAGGGCCGCTTCCTGCTGGTCGAGGAA
CAGGCCGACGGCCGCGAGGTGCTGAACCAGCCCGCCGGGCACCTGGAGCCCGCCGAAAGCCTGCTCGAGGCC
GCCCTGCGCGAAACCCTCGAGGAAACCGGCTGGGAGGTCGAGCTGAGCGCCGTCACCGGCATCTACCTGTAC
ACCGCCCCGTCCAACGGCGTCACCTACCAGCGCGTATGCTTCGCCGCCCGCCCCGTGCGCCACCATCCCGAA
CGCGCCCTCGACGACGGCATCATCGGCCCGCGCTGGCTGACCCGCGACGAACTGGCCGCCCAGCCGCAGCGC
TGGCGCAGCCACCTGGTGCTGCGCTGCATCGACGACTATCTGGCCGGCGGCCGCTATCCCCTGGCGCTGATC
CGCGACACCCACGTGTCGCCCTCCCTGCCCCAGGCCTGA
Translation:
MSWHPHVTVATIVEDQGRFLLVEEQADGREVLNQPAGHLEPAESLLEAALRETLEETGWEVELSAVTGIYLY
TAPSNGVTYQRVCFAARPVRHHPERALDDGIIGPRWLTRDELAAQPQRWRSHLVLRCIDDYLAGGRYPLALI
RDTHVSPSLPQA*
AnnotationID:4361GeneID:4355
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 13:01:41
Gene Name:
Confidence Code:3
GeneProduct:putative NUDIX hydrolase
Cell Localization:()
Synonyms:mutT
Cell Localization Confidence Code:5
MolecularFunction:putative 7,8-dihydro-8-oxoguanine-triphosphatase
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00293,COG1051
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56835.1| (AE016868) mutT/nudix family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 148

 Score =  216 bits (550), Expect = 4e-56
 Identities = 103/146 (70%), Positives = 119/146 (81%)

>gb|AAN69607.1|AE016594_4 (AE016788) MutT/nudix family protein [Pseudomonas putida KT2440]
          Length = 146

 Score =  212 bits (539), Expect = 7e-55
 Identities = 102/146 (69%), Positives = 115/146 (78%)

>gb|AAM36861.1| (AE011835) 7,8-dihydro-8-oxoguanine-triphosphatase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 152

 Score =  164 bits (414), Expect = 2e-40
 Identities = 82/143 (57%), Positives = 101/143 (70%), Gaps = 1/143 (0%)






 
Structural Features:
pfam00293, NUDIX, NUDIX domain.
CD-Length = 133 residues,  96.2% aligned
Score = 61.4 bits (148), Expect = 5e-11

COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
CD-Length = 145 residues,  83.4% aligned
Score = 51.2 bits (122), Expect = 6e-08
Identities = 32/121 (26%), Positives = 42/121 (34%), Gaps = 1/121 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8711




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25854




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33192




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4355_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4355
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6689
                           PA2625_tr
                           translation of PA2625
                           156
                           99.99
                           99.99
                           0
                           827.0
     

     
     
179809
                           gb|AAG06013.1|AE004691_4
                           (AE004691) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           156
                           99.99
                           99.99
                           0
                           827.0
     

     
     
179810
                           gb|AAO56835.1|
                           (AE016868) mutT/nudix family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           156
                           66.02
                           76.28
                           8
                           547.0
     

     
     
179811
                           gb|AAN69607.1|AE016594_4
                           (AE016788) MutT/nudix family protein [Pseudomonas putida KT2440]
                           156
                           65.38
                           73.71
                           10
                           539.0
     

     
     
179812
                           gb|AAM36861.1|
                           (AE011835) 7,8-dihydro-8-oxoguanine-triphosphatase [Xanthomonas axonopodis pv. citri str. 306]
                           161
                           52.17
                           64.59
                           14
                           417.0
     

     






      

          
GC ORFID: 47357How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2625Glimmer Score: 

          
Start: 2341489Stop: 2341959

          
Length: 471


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2625 translation of PA2625Homolog Bit Score 323.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2755 (ORF: BLASTX 229.0), t_PA2625 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCTGGCATCCCCATGTCACCGTAGCGACCATCGTCGAGGACCAGGGCCGCTTCCTGCTGGTCGAGGAA 
CAGGCCGACGGCCGCGAGGTGCTGAACCAGCCCGCCGGGCACCTGGAGCCCGCCGAAAGCCTGCTCGAGGCC 
GCCCTGCGCGAAACCCTCGAGGAAACCGGCTGGGAGGTCGAGCTGAGCGCCGTCACCGGCATCTACCTGTAC 
ACCGCCCCGTCCAACGGCGTCACCTACCAGCGCGTATGCTTCGCCGCCCGCCCCGTGCGCCACCATCCCGAA 
CGCGCCCTCGACGACGGCATCATCGGCCCGCGCTGGCTGACCCGCGACGAACTGGCCGCCCAGCCGCAGCGC 
TGGCGCAGCCACCTGGTGCTGCGCTGCATCGACGACTATCTGGCCGGCGGCCGCTATCCCCTGGCGCTGATC 
CGCGACACCCACGTGTCGCCCTCCCTGCCCCAGGCCTGA