ViewGene

Locus Name:
GeneID:
Location:

GeneID:4353
TrivialName: PA14_62370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62370
PAO1 Ortholog Locus:PA4712
Sequence Length:513
Protein Length:170
Start: 5563973
Stop: 5564485
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08098.1|AE004885_3 (AE004885) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 164/170 (96%), Positives = 166/170 (97%)
Sequence:
ATGCGCCGATTCAGCCTGCGCTTCGTCCTGCTGCTCCTGTTCGGCCTGCTGCTCTATGCCTGCCGCAATGAA
CCGGGCCCCGTACGGCTCGCCCCTGGCGTAACAGCGGCGGATTACAGGACTTTCTTCATCCAGGCGGTACGC
GCCGAGGGGCACCGCATCGACTTCGAGGAGCGTTTCGATACGGCCGTGCGCCGCGCCCTGGAGGCCAAGGGC
TATCGCTACCAGGTGGAACACGGCGACCTGCGGGTGATCTACGCCCTCGGCCTGCAACGCCAGCCGGGCCTG
GAAATGCGACCGGTGATCACCCAGGATGGCGTCTTCACCCAGACCCAACTGACCGAAGACACCGAGGCCAGG
CTGGCGCTGCGCATCCTTGACGAAAGCAACGGCAGGGTCCTTCTGGAAAGCGTGCTGAGCCGCCAACTGCAC
GATCCGGCGCTGACCCAGGAAGCGTTCGACCGCGGCATCGCGCAATTGCTGAAGGACTTCCCGAGTCGCAGT
CAACCTTGA
Translation:
MRRFSLRFVLLLLFGLLLYACRNEPGPVRLAPGVTAADYRTFFIQAVRAEGHRIDFEERFDTAVRRALEAKG
YRYQVEHGDLRVIYALGLQRQPGLEMRPVITQDGVFTQTQLTEDTEARLALRILDESNGRVLLESVLSRQLH
DPALTQEAFDRGIAQLLKDFPSRSQP*
AnnotationID:4359GeneID:4353
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 06:06:53
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4712
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:8707
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25850
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4353

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6687 PA4712_tr translation of PA4712 170 96.47 97.64 0 830.0
179807 gb|AAG08098.1|AE004885_3 (AE004885) hypothetical protein PA4712 [Pseudomonas aeruginosa PAO1] 170 96.47 97.64 0 830.0
GC ORFID: 47355How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4712Glimmer Score:
Start: 4827653Stop: 4828165
Length: 513
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4712 translation of PA4712Homolog Bit Score 324.0
Other Homologs: t_PA4712 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCGATTCAGCCTGCGCTTCGTCCTGCTGCTCCTGTTCGGCCTGCTGCTCTATGCCTGCCGCAATGAA
CCGGGCCCCGTACGGCTCGCCCCTGGCGTAACAGCGGCGGATTACAGGACTTTCTTCATCCAGGCGGTACGC
GCCGAGGGGCACCGCATCGACTTCGAGGAGCGTTTCGATACGGCCGTGCGCCGCGCCCTGGAGGCCAAGGGC
TATCGCTACCAGGTGGAACACGGCGACCTGCGGGTGATCTACGCCCTCGGCCTGCAACGCCAGCCGGGCCTG
GAAATGCGACCGGTGATCACCCAGGATGGCGTCTTCACCCAGACCCAACTGACCGAAGACACCGAGGCCAGG
CTGGCGCTGCGCATCCTTGACGAAAGCAACGGCAGGGTCCTTCTGGAAAGCGTGCTGAGCCGCCAACTGCAC
GATCCGGCGCTGACCCAGGAAGCGTTCGACCGCGGCATCGCGCAATTGCTGAAGGACTTCCCGAGTCGCAGT
CAACCTTGA