ViewGene
Locus Name:
GeneID:
Location:

GeneID:4352
TrivialName: PA14_61440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61440
PAO1 Ortholog Locus:PA4643
Sequence Length:486
Protein Length:161
Start: 5483524
Stop: 5483039
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08030.1|AE004878_8 (AE004878) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 161/161 (100%), Positives = 161/161 (100%)
Sequence:
ATGTTCGCCCGTAGCCTGTGCGGCTCCCTGCTCCTGTTCGTCAGTCTGGCCGGCCTGGCCGCCGAGAATCCC
CCGATGCACGCGCGCTTCCTGCCGCCCGACGATGGCCAGTTGCGCCAGGAGGCGCCGGAGCAGCAGCAACTG
ATCCAGATCACCGAGTACAGCGTGGTGCTGGGCAACCAGCGGCAGTCCAACCAGCAGCCGATCCCGATCACC
ACGCCGACCCTGCTGCGCCTGAAGGGCAAACCGCTGAGCAAGGGCGCGACCCTGGCCCAGGTGCTGATCCAG
TTCGACAGCGAAGGCAAGAGCCTGAAGAAGCCGGTCTACGATGCCGGGACCCGCACCCTCACGCTCAACTAC
CCGCTGGCGCAGTACCCGGCTTTGCTCGACCTGCTGCGCAACCAGACGGTCTATTGCCAGTTCCTCGCCTAT
CCCAACGGCCATGTCTGGGCCGACCTGCACACCGGCGCGGTACGCGCGCGTTGA
Translation:
MFARSLCGSLLLFVSLAGLAAENPPMHARFLPPDDGQLRQEAPEQQQLIQITEYSVVLGNQRQSNQQPIPIT
TPTLLRLKGKPLSKGATLAQVLIQFDSEGKSLKKPVYDAGTRTLTLNYPLAQYPALLDLLRNQTVYCQFLAY
PNGHVWADLHTGAVRAR*
AnnotationID:4358GeneID:4352
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 18:06:16
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4643
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8705




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25848




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4352
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6686
                           PA4643_tr
                           translation of PA4643
                           161
                           99.99
                           99.99
                           0
                           831.0
     

     
     
179804
                           gb|AAG08030.1|AE004878_8
                           (AE004878) hypothetical protein PA4643 [Pseudomonas aeruginosa PAO1]
                           161
                           99.99
                           99.99
                           0
                           831.0
     

     
     
179805
                           gb|AAN66374.1|AE016265_8
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           162
                           65.43
                           79.01
                           7
                           530.0
     

     
     
179806
                           gb|AAO54661.1|
                           (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           166
                           59.63
                           73.49
                           7
                           512.0
     

     






      

          
GC ORFID: 47354How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4643Glimmer Score: 

          
Start: 4747204Stop: 4746719

          
Length: 486


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4643 translation of PA4643Homolog Bit Score 324.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4309 (ORF: BLASTX 198.0), t_PA4643 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCGCCCGTAGCCTGTGCGGCTCCCTGCTCCTGTTCGTCAGTCTGGCCGGCCTGGCCGCCGAGAATCCC 
CCGATGCACGCGCGCTTCCTGCCGCCCGACGATGGCCAGTTGCGCCAGGAGGCGCCGGAGCAGCAGCAACTG 
ATCCAGATCACCGAGTACAGCGTGGTGCTGGGCAACCAGCGGCAGTCCAACCAGCAGCCGATCCCGATCACC 
ACGCCGACCCTGCTGCGCCTGAAGGGCAAACCGCTGAGCAAGGGCGCGACCCTGGCCCAGGTGCTGATCCAG 
TTCGACAGCGAAGGCAAGAGCCTGAAGAAGCCGGTCTACGATGCCGGGACCCGCACCCTCACGCTCAACTAC 
CCGCTGGCGCAGTACCCGGCTTTGCTCGACCTGCTGCGCAACCAGACGGTCTATTGCCAGTTCCTCGCCTAT 
CCCAACGGCCATGTCTGGGCCGACCTGCACACCGGCGCGGTACGCGCGCGTTGA