ViewGene
Locus Name:
GeneID:
Location:

GeneID:4350
TrivialName: PA14_18670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18670
PAO1 Ortholog Locus:PA3531
Sequence Length:477
Protein Length:158
Start: 1607852
Stop: 1607376
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06919.1|AE004773_8 (AE004773) bacterioferritin [Pseudomonas aeruginosa PAO1]
Identities = 158/158 (100%), Positives = 158/158 (100%)
Sequence:
ATGAAAGGCGACAAGAAAGTCATCCAGCACCTCAACAAGATCCTCGGCAACGAGCTGATCGCGATCAACCAG
TACTTCCTCCACTCGCGCATGTGGAACGACTGGGGCCTGAAGCGCCTCGGCGCCCATGAGTACCACGAGTCG
ATCGACGAGATGAAGCATGCCGACAAGCTCATCGAGCGCATCCTGTTCCTCGAAGGCCTGCCCAACCTGCAG
GACCTCGGCAAGCTGCTGATCGGCGAGAACACCCAGGAAATGCTGCAGTGCGACCTGAACCTGGAGCTGAAG
GCGACCAAGGACCTGCGCGAAGCCATCGTGCATTGCGAGCAGGTGCACGACTACGTCAGCCGCGACCTGCTG
AAGGACATCCTGGAGTCGGAAGAAGAGCACATCGACTACCTGGAGACCCAGCTGGGCCTGATCCAGAAAGTC
GGCCTGGAGAATTACCTGCAGTCGCACATGCACGAAGACGACTGA
Translation:
MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQ
DLGKLLIGENTQEMLQCDLNLELKATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKV
GLENYLQSHMHEDD*
AnnotationID:4356GeneID:4350
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 17:05:38
Gene Name:bfrB
Confidence Code:2
GeneProduct:bacterioferritin
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00907,COG2193
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAA22121.1| (M83692) bacterioferritin [Azotobacter vinelandii]
          Length = 156

 Score =  251 bits (642), Expect = 8e-67
 Identities = 122/156 (78%), Positives = 138/156 (88%)

>gb|AAO57616.1| (AE016871) bacterioferritin [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 156

 Score =  230 bits (586), Expect = 3e-60
 Identities = 113/154 (73%), Positives = 131/154 (85%)

>gb|AAN82545.1|AE016767_305 (AE016767) Bacterioferritin [Escherichia coli CFT073]
          Length = 158

 Score =  226 bits (577), Expect = 3e-59
 Identities = 110/157 (70%), Positives = 133/157 (84%)






 
Structural Features:
cd00907, Bacterioferritin, Bacterioferritins, also known as cytochrome b1
CD-Length = 153 residues, 100.0% aligned
Score =  214 bits (547), Expect = 3e-57

COG2193, Bfr, Bacterioferritin (cytochrome b1) 
[Inorganic ion transport and metabolism]
CD-Length = 157 residues, 100.0% aligned
Score =  223 bits (570), Expect = 7e-60
Identities = 114/157 (72%), Positives = 131/157 (83%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8701




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25844




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32032




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4350_cdd.html


    		




 
URL:

















    ReferenceID:34123




  
Author/Investigator(s):
        Beall B.





  
Title:
        Two iron-regulated putative ferric siderophore receptor genes in Bordetella bronchiseptica and Bordetella pertussis.




  
PubMed:
        9766221


MedLine:
        




    
Source:
Res Microbiol. 1998 Mar;149(3):189-201.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9766221









           
Homologs By Global Alignment 

           

       



     
Gene ID:4350
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6683
                           PA3531_tr
                           translation of PA3531
                           158
                           99.99
                           99.99
                           0
                           830.0
     

     
     
179573
                           gb|AAG06919.1|AE004773_8
                           (AE004773) bacterioferritin [Pseudomonas aeruginosa PAO1]
                           158
                           99.99
                           99.99
                           0
                           830.0
     

     
     
179574
                           gb|AAA22121.1|
                           (M83692) bacterioferritin [Azotobacter vinelandii]
                           158
                           77.21
                           87.34
                           2
                           642.0
     

     
     
179578
                           gb|AAQ61063.1|
                           (AE016922) bacterioferritin [Chromobacterium violaceum ATCC 12472]
                           158
                           74.68
                           86.70
                           0
                           617.0
     

     
     
179575
                           gb|AAN66707.1|AE016299_3
                           (AE016778) bacterioferritin [Pseudomonas putida KT2440]
                           158
                           74.05
                           86.70
                           1
                           629.0
     

     






      

          
GC ORFID: 47352How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3531Glimmer Score: 

          
Start: 3346082Stop: 3346558

          
Length: 477


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3531 translation of PA3531Homolog Bit Score 324.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6120 (ORF: BLASTX 230.0), t_PA4235 (ORF: BLASTX 135.0), psyr_15may02_Scaffold4_revised_gene5215 (ORF: BLASTX 130.0), t_PA3531 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGGCGACAAGAAAGTCATCCAGCACCTCAACAAGATCCTCGGCAACGAGCTGATCGCGATCAACCAG 
TACTTCCTCCACTCGCGCATGTGGAACGACTGGGGCCTGAAGCGCCTCGGCGCCCATGAGTACCACGAGTCG 
ATCGACGAGATGAAGCATGCCGACAAGCTCATCGAGCGCATCCTGTTCCTCGAAGGCCTGCCCAACCTGCAG 
GACCTCGGCAAGCTGCTGATCGGCGAGAACACCCAGGAAATGCTGCAGTGCGACCTGAACCTGGAGCTGAAG 
GCGACCAAGGACCTGCGCGAAGCCATCGTGCATTGCGAGCAGGTGCACGACTACGTCAGCCGCGACCTGCTG 
AAGGACATCCTGGAGTCGGAAGAAGAGCACATCGACTACCTGGAGACCCAGCTGGGCCTGATCCAGAAAGTC 
GGCCTGGAGAATTACCTGCAGTCGCACATGCACGAAGACGACTGA