ViewGene
Locus Name:
GeneID:
Location:

GeneID:435
TrivialName: PA14_25020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25020
PAO1 Ortholog Locus:PA3019
Sequence Length:1923
Protein Length:640
Start: 2187619
Stop: 2189541
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06407.1|AE004727_3 (AE004727) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 637/640 (99%), Positives = 638/640 (99%)
Sequence:
ATGACCCTGCTCAAGTTCACCGATGTATCCCTTGCCTTTGGCACCACTCCCTTGCTGGACAAGGTGTCGTGG
CAGATCGGCCGTGGCGAGCGGGTCTGCGTGATCGGGCGCAACGGTACCGGCAAGTCCAGCCTGTTCAAGGTG
GTCAAGGGCGAACAGCAGGCCGACGACGGCGAAGTCTGGCGCGCACCGGCGCTGAAGATCGGCGAATTGCCC
CAGGAACTGCCGCGTGCCGACGAACGGACAGTGTTCGACGTGGTGGCCGAGGGTCTGGCGGAAGTCGGCAAG
CTGCTCGCCGAGTACCACCACCTGAGCCAGAACATCCATACCGACGATGACCTGGCGCGCCTCTCGCGGGTC
CAGCAGGAACTCGAGGCGCGCGATGGCTGGCGCCTGCAGCAACTGGTGGACAGCACCCTCAGCCGCCTGCAG
TTGCCGGCCGACAAGACCCTCGCCGAACTCTCCGGCGGCTGGCGTCGGCGCGTGCTGCTGGCCCAGGCGCTG
GTCGCCGAGCCGGACCTGCTGCTGCTCGACGAACCGACCAACCACCTGGACATCGGCGCCATCGCCTGGCTC
GAGGAAGCGCTGCTGGGCTTCAACGGCGCGGTGCTGTTCATTACCCACGACCGCGCCTTCCTGCAATCCCTG
GCGACCCGCATCCTCGAGCTGGATCGTGGCCACCTGATCGACTGGAACGGCGATTACGCCAGTTTCCTGGTG
CACAAGGAACAGCAACTGGCCGCCGAAGAAGCTGCCAACGCATTGTTCGACAAGCGCCTGGCCCAGGAAGAA
GTGTGGATCCGCCAGGGCATCAAGGCCCGCCGCACGCGCAACGAAGGGCGGGTTCGGGCACTGAAGGAAATG
CGTCGCGAACGCGCCGAGCGCCGCGAGCGCCAGGGCAAGGCCAGCTTCCAGCTGGAAAGCGCGGACAAGTCC
GGCAAGCAGGTGATCGTGGTGGAGCACGTCAGCTTCGCCCATCCCGGCGGCCAGCCGCTGGTACGCGACTTC
TCCATGGTCCTGCAGCGCGGCGACCGTATCGGCCTGCTCGGCGCCAACGGTACCGGCAAGACCACCTTGCTC
AAGCTGCTGCTTGGCGACCTGCAGCCGACCTCGGGCAAGATCGAGGTGGGCACCAAGCTGGAAGTGGCCTAC
TTCGACCAGTTGCGCCATCAGCTCGAACCCGAGCAGACGGTGATCGACAATATCTCCGAAGGCCGCGAGTTC
ATCACCATCGACGGCCAGAACCGGCATGTGCTCAGCTATCTCGGCGACTTCCTGTTCAGTCCGCAGCGCGCC
CGCACCCCGGTGAAGGCGTTGTCCGGCGGCGAGCGCGCGCGCCTGTTGCTGGCCAAGCTGTTCAGCAAGCCG
GCCAACCTGCTGGTGCTCGACGAACCGACCAACGACCTCGACGTGGAAACCCTGGAACTGCTGGAGGAAGTC
CTGCTCGGCTTCCAGGGCACCGTGCTGATGGTCAGCCACGATCGGGCCTTCCTCGACAACGTGGTGACCAGC
ACCCTGGTCTTCGAGGGCGAGGGCAAGGTTCGCGAATTCGTCGGTGGCTACCAGGACTGGCTGCGCCAAGGG
GGCACGCCGCGCCTGCTCGGCGTGAGCGAGTCGAAGAGCGGCAAGGCCGAGCTGAATACCGCGCTGGCGCCC
GCCGCCGAACCCGCGCCGGCTGCTGCGGCGCCGAGCGAGGCGCCGGCGAAGAAAAAGCTCAGCTACAAGTTG
CAGCGCGAGCTGGAGGCTTTGCCCGGGCAGATCGACGCGGTCGAGGCGGAGCTGGCGGGTGTCCAGGAAACC
ATCGCGGAGCAGGATTTCTATCTGCGCCCGCAGGACGAGCAGCGCGAAACCCTGGCGCGGCTGGACGCGTTG
CAGCAGGAACTCGATGCCTTGCTCGAGCGCTGGGCCGAACTGGAAGACTGA
Translation:
MTLLKFTDVSLAFGTTPLLDKVSWQIGRGERVCVIGRNGTGKSSLFKVVKGEQQADDGEVWRAPALKIGELP
QELPRADERTVFDVVAEGLAEVGKLLAEYHHLSQNIHTDDDLARLSRVQQELEARDGWRLQQLVDSTLSRLQ
LPADKTLAELSGGWRRRVLLAQALVAEPDLLLLDEPTNHLDIGAIAWLEEALLGFNGAVLFITHDRAFLQSL
ATRILELDRGHLIDWNGDYASFLVHKEQQLAAEEAANALFDKRLAQEEVWIRQGIKARRTRNEGRVRALKEM
RRERAERRERQGKASFQLESADKSGKQVIVVEHVSFAHPGGQPLVRDFSMVLQRGDRIGLLGANGTGKTTLL
KLLLGDLQPTSGKIEVGTKLEVAYFDQLRHQLEPEQTVIDNISEGREFITIDGQNRHVLSYLGDFLFSPQRA
RTPVKALSGGERARLLLAKLFSKPANLLVLDEPTNDLDVETLELLEEVLLGFQGTVLMVSHDRAFLDNVVTS
TLVFEGEGKVREFVGGYQDWLRQGGTPRLLGVSESKSGKAELNTALAPAAEPAPAAAAPSEAPAKKKLSYKL
QRELEALPGQIDAVEAELAGVQETIAEQDFYLRPQDEQRETLARLDALQQELDALLERWAELED*
AnnotationID:444GeneID:435
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 19:07:41
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter, ATP-binding protein
Cell Localization:()
Synonyms:uup
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0488
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67744.1|AE016405_7 (AE016782) ABC transporter, ATP-binding protein [Pseudomonas putida
           KT2440]
          Length = 642

 Score = 1012 bits (2617), Expect = 0.0
 Identities = 514/641 (80%), Positives = 569/641 (88%), Gaps = 2/641 (0%)

>gb|AAO56996.1| (AE016868) ABC transporter, ATP-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 636

 Score = 1008 bits (2605), Expect = 0.0
 Identities = 516/640 (80%), Positives = 571/640 (89%), Gaps = 4/640 (0%)

>gb|AAO10980.1|AE016805_237 (AE016805) ATPase component of ABC transporter with duplicated
           ATPase domains [Vibrio vulnificus CMCP6]
          Length = 639

 Score =  657 bits (1696), Expect = 0.0
 Identities = 340/646 (52%), Positives = 453/646 (70%), Gaps = 20/646 (3%)








 
Structural Features:
COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains
CD-Length = 530 residues, 100.0% aligned
Score =  546 bits (1408), Expect = 3e-156
Identities = 248/537 (46%), Positives = 343/537 (63%), Gaps = 13/537 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:873




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18015




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36032




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:435_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:435
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
742
                           PA3019_tr
                           translation of PA3019
                           640
                           99.53
                           99.68
                           0
                           3212.0
     

     
     
32943
                           gb|AAG06407.1|AE004727_3
                           (AE004727) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           640
                           99.53
                           99.68
                           0
                           3212.0
     

     
     
32945
                           gb|AAO56996.1|
                           (AE016868) ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           641
                           80.81
                           89.54
                           6
                           2610.0
     

     
     
32944
                           gb|AAN67744.1|AE016405_7
                           (AE016782) ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           642
                           80.06
                           88.62
                           2
                           2618.0
     

     
     
32950
                           gb|AAM37241.1|
                           (AE011875) ABC transporter ATP-binding protein [Xanthomonas axonopodis pv. citri str. 306]
                           641
                           53.19
                           70.20
                           13
                           1690.0
     

     






      

          
GC ORFID: 43437How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3019Glimmer Score: 

          
Start: 2766308Stop: 2764386

          
Length: 1923


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3019 translation of PA3019Homolog Bit Score 1241.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8040 (ORF: BLASTX 1006.0), t_PA3019 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCTGCTCAAGTTCACCGATGTATCCCTTGCCTTTGGCACCACTCCCTTGCTGGACAAGGTGTCGTGG 
CAGATCGGCCGTGGCGAGCGGGTCTGCGTGATCGGGCGCAACGGTACCGGCAAGTCCAGCCTGTTCAAGGTG 
GTCAAGGGCGAACAGCAGGCCGACGACGGCGAAGTCTGGCGCGCACCGGCGCTGAAGATCGGCGAATTGCCC 
CAGGAACTGCCGCGTGCCGACGAACGGACAGTGTTCGACGTGGTGGCCGAGGGTCTGGCGGAAGTCGGCAAG 
CTGCTCGCCGAGTACCACCACCTGAGCCAGAACATCCATACCGACGATGACCTGGCGCGCCTCTCGCGGGTC 
CAGCAGGAACTCGAGGCGCGCGATGGCTGGCGCCTGCAGCAACTGGTGGACAGCACCCTCAGCCGCCTGCAG 
TTGCCGGCCGACAAGACCCTCGCCGAACTCTCCGGCGGCTGGCGTCGGCGCGTGCTGCTGGCCCAGGCGCTG 
GTCGCCGAGCCGGACCTGCTGCTGCTCGACGAACCGACCAACCACCTGGACATCGGCGCCATCGCCTGGCTC 
GAGGAAGCGCTGCTGGGCTTCAACGGCGCGGTGCTGTTCATTACCCACGACCGCGCCTTCCTGCAATCCCTG 
GCGACCCGCATCCTCGAGCTGGATCGTGGCCACCTGATCGACTGGAACGGCGATTACGCCAGTTTCCTGGTG 
CACAAGGAACAGCAACTGGCCGCCGAAGAAGCTGCCAACGCATTGTTCGACAAGCGCCTGGCCCAGGAAGAA 
GTGTGGATCCGCCAGGGCATCAAGGCCCGCCGCACGCGCAACGAAGGGCGGGTTCGGGCACTGAAGGAAATG 
CGTCGCGAACGCGCCGAGCGCCGCGAGCGCCAGGGCAAGGCCAGCTTCCAGCTGGAAAGCGCGGACAAGTCC 
GGCAAGCAGGTGATCGTGGTGGAGCACGTCAGCTTCGCCCATCCCGGCGGCCAGCCGCTGGTACGCGACTTC 
TCCATGGTCCTGCAGCGCGGCGACCGTATCGGCCTGCTCGGCGCCAACGGTACCGGCAAGACCACCTTGCTC 
AAGCTGCTGCTTGGCGACCTGCAGCCGACCTCGGGCAAGATCGAGGTGGGCACCAAGCTGGAAGTGGCCTAC 
TTCGACCAGTTGCGCCATCAGCTCGAACCCGAGCAGACGGTGATCGACAATATCTCCGAAGGCCGCGAGTTC 
ATCACCATCGACGGCCAGAACCGGCATGTGCTCAGCTATCTCGGCGACTTCCTGTTCAGTCCGCAGCGCGCC 
CGCACCCCGGTGAAGGCGTTGTCCGGCGGCGAGCGCGCGCGCCTGTTGCTGGCCAAGCTGTTCAGCAAGCCG 
GCCAACCTGCTGGTGCTCGACGAACCGACCAACGACCTCGACGTGGAAACCCTGGAACTGCTGGAGGAAGTC 
CTGCTCGGCTTCCAGGGCACCGTGCTGATGGTCAGCCACGATCGGGCCTTCCTCGACAACGTGGTGACCAGC 
ACCCTGGTCTTCGAGGGCGAGGGCAAGGTTCGCGAATTCGTCGGTGGCTACCAGGACTGGCTGCGCCAAGGG 
GGCACGCCGCGCCTGCTCGGCGTGAGCGAGTCGAAGAGCGGCAAGGCCGAGCTGAATACCGCGCTGGCGCCC 
GCCGCCGAACCCGCGCCGGCTGCTGCGGCGCCGAGCGAGGCGCCGGCGAAGAAAAAGCTCAGCTACAAGTTG 
CAGCGCGAGCTGGAGGCTTTGCCCGGGCAGATCGACGCGGTCGAGGCGGAGCTGGCGGGTGTCCAGGAAACC 
ATCGCGGAGCAGGATTTCTATCTGCGCCCGCAGGACGAGCAGCGCGAAACCCTGGCGCGGCTGGACGCGTTG 
CAGCAGGAACTCGATGCCTTGCTCGAGCGCTGGGCCGAACTGGAAGACTGA