ViewGene
Locus Name:
GeneID:
Location:

GeneID:4349
TrivialName: PA14_27530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27530
PAO1 Ortholog Locus:PA2825
Sequence Length:492
Protein Length:163
Start: 2389422
Stop: 2389913
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06213.1|AE004709_6 (AE004709) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 162/163 (99%), Positives = 162/163 (99%)
Sequence:
ATGAGCACCCGGGGAAAAGTCGCCAGACCGGATGGCGTCGAAGAATCGCTGCTGCTCGACAACCAGCTGTGT
TTCAAGCTGTACGCCGCCTCGCGCGCAGTGATCCGCGGCTATCGGCCGCTGCTCGAACAGATCGGCCTGACC
TATCCGCAGTACCTGGTCATGCTGGTGCTCTGGGAGTGGCATGCGAGCCCGCCGGAGCAGCCGACGGTGAAG
GCCCTGGGCGACCGCCTGCTGCTCGACTCGGGAACCCTGACGCCCTTGCTCAAGCGCCTCGAACAGCTCGGC
CTGGTGGATCGCCGTCGCGCCAGCCACGATGAGCGGGAGGTGCACCTGGCGCTGACGGTGCCAGGGATCACC
TTGCGCGAACGGGTCATTCCGCTGCGCCAGCAACTGATCTGCAGCACCGGTTTCGACCTCAACGAGATGTTC
GACCTGCACCAGCGCCTGGGCGGGTTGCTGTCGCGTTTTCGCCTGGTGGTGGGAGGCTAG
Translation:
MSTRGKVARPDGVEESLLLDNQLCFKLYAASRAVIRGYRPLLEQIGLTYPQYLVMLVLWEWHASPPEQPTVK
ALGDRLLLDSGTLTPLLKRLEQLGLVDRRRASHDEREVHLALTVPGITLRERVIPLRQQLICSTGFDLNEMF
DLHQRLGGLLSRFRLVVGG*
AnnotationID:4355GeneID:4349
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 13:01:44
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, MarR family
Cell Localization:()
Synonyms:PA2825
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1846
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC46001.1| (AP005937) transcriptional regulatory protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 197

 Score =  135 bits (341), Expect = 7e-32
 Identities = 71/154 (46%), Positives = 100/154 (64%), Gaps = 5/154 (3%)

>dbj|BAC71321.1| (AP005035) putative MarR-family transcriptional regulator
           [Streptomyces avermitilis MA-4680]
          Length = 153

 Score =  134 bits (337), Expect = 2e-31
 Identities = 76/141 (53%), Positives = 93/141 (65%), Gaps = 5/141 (3%)

>gb|AAF96901.1| (AE004427) transcriptional regulator, MarR family [Vibrio cholerae]
          Length = 152

 Score =  131 bits (330), Expect = 1e-30
 Identities = 70/132 (53%), Positives = 90/132 (68%), Gaps = 5/132 (3%)






 
Structural Features:
COG1846, MarR, Transcriptional regulators [Transcription]
CD-Length = 126 residues,  94.4% aligned
Score = 60.7 bits (146), Expect = 8e-11
Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 8/124 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8699




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25842




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36222




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4349_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4349
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6681
                           PA2825_tr
                           translation of PA2825
                           163
                           99.38
                           99.38
                           0
                           831.0
     

     
     
179523
                           gb|AAG06213.1|AE004709_6
                           (AE004709) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           163
                           99.38
                           99.38
                           0
                           831.0
     

     
     
179530
                           gb|AAK22899.1|
                           (AE005768) transcriptional regulator, MarR family [Caulobacter crescentus CB15]
                           163
                           49.07
                           58.28
                           15
                           324.0
     

     
     
179525
                           dbj|BAC71321.1|
                           (AP005035) putative MarR-family transcriptional regulator [Streptomyces avermitilis MA-4680]
                           165
                           46.66
                           58.18
                           14
                           327.0
     

     
     
179528
                           gb|AAK86653.1|
                           (AE008017) AGR_C_1544p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           167
                           46.10
                           59.28
                           19
                           327.0
     

     






      

          
GC ORFID: 47351How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2825Glimmer Score: 

          
Start: 2564505Stop: 2564014

          
Length: 492


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2825 translation of PA2825Homolog Bit Score 324.0

          
Other Homologs:  t_PA2849 (ORF: BLASTX 115.0), psyr_15may02_Scaffold8_revised_gene7673 (ORF: BLASTX 114.0), t_PA2825 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCACCCGGGGAAAAGTCGCCAGACCGGATGGCGTCGAAGAATCGCTGCTGCTCGACAACCAGCTGTGT 
TTCAAGCTGTACGCCGCCTCGCGCGCAGTGATCCGCGGCTATCGGCCGCTGCTCGAACAGATCGGCCTGACC 
TATCCGCAGTACCTGGTCATGCTGGTGCTCTGGGAGTGGCATGCGAGCCCGCCGGAGCAGCCGACGGTGAAG 
GCCCTGGGCGACCGCCTGCTGCTCGACTCGGGAACCCTGACGCCCTTGCTCAAGCGCCTCGAACAGCTCGGC 
CTGGTGGATCGCCGTCGCGCCAGCCACGATGAGCGGGAGGTGCACCTGGCGCTGACGGTGCCAGGGATCACC 
TTGCGCGAACGGGTCATTCCGCTGCGCCAGCAACTGATCTGCAGCACCGGTTTCGACCTCAACGAGATGTTC 
GACCTGCACCAGCGCCTGGGCGGGTTGCTGTCGCGTTTTCGCCTGGTGGTGGGAGGCTAG