ViewGene
Locus Name:
GeneID:
Location:

GeneID:4348
TrivialName: PA14_33250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33250
PAO1 Ortholog Locus:PA2427
Sequence Length:468
Protein Length:155
Start: 2909570
Stop: 2910037
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05815.1|AE004670_3 (AE004670) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/155 (99%), Positives = 154/155 (99%)
Sequence:
ATGCTTCCGTCCCCAGCCTCCAGCCTGTCGTTTCCGTCGCCCCTCGAGCGCCGCGAGGCCGATCCATATGCC
CGCTGCGACAGGCAGCGGCCTGCGTGCAACGAGTCGCACGAACCGGCGCAGGAGCGTCCTGAACCTGTCGCA
ACCTGCGCATTCATCGAGGAGGAGCGCCGGTGTGGCGATCCCACGGGCTTGCTTTACGCCCTTGGGCCGCGG
GAGCGGGGAGAGCCGGAGCGGGTGGCGGAGTGGTTGGCGGCGCTGGTCCACCATTTCTACCTGGACGGTCCC
GTTGAGCCGCCGAGGACAACGCTGGGAAAGGAGCGCTGCGAAACCGCGCCGGGCCTTTGCCGCTGCTGCGGC
CAACCCTTCGATTTTCGCCACAAGCGCGCGGCGCTGTTGCTGCTGGGAACCCATTTCGCCGCCAGGGCCGAG
GCGCAGGCGGCGTCGGTGCGCCGCTACCGGCGCTGA
Translation:
MLPSPASSLSFPSPLERREADPYARCDRQRPACNESHEPAQERPEPVATCAFIEEERRCGDPTGLLYALGPR
ERGEPERVAEWLAALVHHFYLDGPVEPPRTTLGKERCETAPGLCRCCGQPFDFRHKRAALLLLGTHFAARAE
AQAASVRRYRR*
AnnotationID:4354GeneID:4348
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:09
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2427
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8697




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25840




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4348
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6680
                           PA2427_tr
                           translation of PA2427
                           155
                           99.35
                           99.35
                           0
                           831.0
     

     
     
179521
                           gb|AAG05815.1|AE004670_3
                           (AE004670) hypothetical protein PA2427 [Pseudomonas aeruginosa PAO1]
                           155
                           99.35
                           99.35
                           0
                           831.0
     

     
     
179522
                           gb|AAB09717.1|
                           (U12891) ORF2 [Pseudomonas aeruginosa]
                           155
                           96.12
                           96.77
                           0
                           803.0
     

     






      

          
GC ORFID: 47350How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2427Glimmer Score: 

          
Start: 2044346Stop: 2043879

          
Length: 468


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2427 translation of PA2427Homolog Bit Score 324.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCTTCCGTCCCCAGCCTCCAGCCTGTCGTTTCCGTCGCCCCTCGAGCGCCGCGAGGCCGATCCATATGCC 
CGCTGCGACAGGCAGCGGCCTGCGTGCAACGAGTCGCACGAACCGGCGCAGGAGCGTCCTGAACCTGTCGCA 
ACCTGCGCATTCATCGAGGAGGAGCGCCGGTGTGGCGATCCCACGGGCTTGCTTTACGCCCTTGGGCCGCGG 
GAGCGGGGAGAGCCGGAGCGGGTGGCGGAGTGGTTGGCGGCGCTGGTCCACCATTTCTACCTGGACGGTCCC 
GTTGAGCCGCCGAGGACAACGCTGGGAAAGGAGCGCTGCGAAACCGCGCCGGGCCTTTGCCGCTGCTGCGGC 
CAACCCTTCGATTTTCGCCACAAGCGCGCGGCGCTGTTGCTGCTGGGAACCCATTTCGCCGCCAGGGCCGAG 
GCGCAGGCGGCGTCGGTGCGCCGCTACCGGCGCTGA