ViewGene

Locus Name:
GeneID:
Location:

GeneID:4347
TrivialName: PA14_35880
AnnotatorUID: ericdeziel
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35880
PAO1 Ortholog Locus:
Sequence Length:1440
Protein Length:479
Start: 3192356
Stop: 3193795
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK01506.1| (AF241171) putative aldehyde dehydrogenase [Pseudomonas aeruginosa]
Identities = 472/474 (99%), Positives = 473/474 (99%) to gene #16 of PAGI-1 island.
Sequence:
ATGGCGAGAATCGATATGCAAACCAAACTTCTGATCAATGGTGCCCTGGTGGCCGGCGAAAGCGAGAGCCAC
GCGGTGTACAACCCGTCCCAGGGCAACGTCCTGGTGCGAATTACCGAGGCCAGCGGCGCCCAGGTCCATGCC
GCGGTGCAGAGCGCGGATGCGGCCTTCGACGCCTGGTCGCAAACGCCGCCCAAGGATCGCGCGGCCCTGCTG
CTCAAGCTTGCCGAGCGCATCGATGCCCAGGCGCACGTGTTCGCTCGCCTGGAGGCGGACAACTGCGGCAAG
CCTTTCAACGCCGTGCTGCTGGACGAACTGCCCGCCGTGTCGGACGTGTTCCGTTTCTTTGCCGGCGCCGTG
CGCTGCCTGCAGGGCTCGGCGGCGGGAGAGTACGTCGCGGGGCATACTTCGATGATCCGCCGCGACGCGGTA
GGCGTGGTCGCCTCCATCGCGCCGTGGAACTATCCGTTGTTGATGGCAGCGTGGAAACTCGGCCCGGCATTG
GCCGGCGGCAACACCGTGGTGCTGAAACCGTCGGAGCACACGCCGCTGAGTACCTTGAAACTGGGCGAGCTG
CTTGCCGAGATCTTCCCCGCCGGCGTGGTCAACATCGTCCACGGTCGAGGTGCCTCGGTGGGTGAGCCGCTG
ACCAGCCATGCCCAGGTGCGCATGGTGTCGCTGACCGGCTCCGTGCGCACCGGCAGCCGGATCATCGAAGGT
ACGGCCGAGAGCGTGAAACGCATGCACATGGAGTTGGGGGGCAAGGCTCCTGTACTGATCTTCGACGATGCC
GACATCGACGCCGCCGTCGAAGGCATCCGCGCCTTCGGCTTCTACAACGCCGGCCAGGACTGTACCGCCGCG
TGCCGCCTCTATGTGCAGAAAGGGGTCTACCAGGAGTTCGTTCGCAAGCTCGGCGAGGCCGTATCCAGCATC
CGGTGCGGGCTGCCGGACGATCCGGCGACCGAGATGGGACCGCTGATCACCAAGGAGCATCTGGAGCGTGTC
GAGGGGTTCGTGAACCGGGCCAGGGAGTTGCCGCACATCGAAGTGGTCACCGGCGGCAAGCGCGCCGAGGGT
GCCGGCTTCTTCTTCGAGCCGACGGTCCTGGCCGGCGCTACACAGGAGGATGAGGTGGTGCGCCGCGAGATC
TTCGGCCCGGTGGTGACCGTCTCGTCGTTCGAGGATGAAGCCCAGGCGCTGGCTTGGGCGAACGACTCCGAC
TACGGCCTGGCGTCTTCGGTATGGACCGCCGATGTGGGGCGCGCTCATCGCCTGGCCGCCCGCCTGCAATAC
GGCTGCACCTGGGTCAACACCCACTTCATGCTGGTCAGCGAAATGCCCCACGGCGGGGTCAAGCTGTCCGGC
TACGGCAAGGACCTGTCGATGTACGGCCTGGAAGACTACACCGTGGTGCGCCACGTGATGTTCAAGCACTGA
Translation:
MARIDMQTKLLINGALVAGESESHAVYNPSQGNVLVRITEASGAQVHAAVQSADAAFDAWSQTPPKDRAALL
LKLAERIDAQAHVFARLEADNCGKPFNAVLLDELPAVSDVFRFFAGAVRCLQGSAAGEYVAGHTSMIRRDAV
GVVASIAPWNYPLLMAAWKLGPALAGGNTVVLKPSEHTPLSTLKLGELLAEIFPAGVVNIVHGRGASVGEPL
TSHAQVRMVSLTGSVRTGSRIIEGTAESVKRMHMELGGKAPVLIFDDADIDAAVEGIRAFGFYNAGQDCTAA
CRLYVQKGVYQEFVRKLGEAVSSIRCGLPDDPATEMGPLITKEHLERVEGFVNRARELPHIEVVTGGKRAEG
AGFFFEPTVLAGATQEDEVVRREIFGPVVTVSSFEDEAQALAWANDSDYGLASSVWTADVGRAHRLAARLQY
GCTWVNTHFMLVSEMPHGGVKLSGYGKDLSMYGLEDYTVVRHVMFKH*
AnnotationID:4353GeneID:4347
AnnotatorUID: danlee
Modification Date/Time: 2005-10-11 17:05:17
Gene Name:PAGI-1(16)
Confidence Code:3
GeneProduct:Probable aldehyde dehydrogenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00171, COG1012
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|12698392|gb|AAK01506.1|  putative aldehyde dehydrogenase [Pseudomonas aeruginosa]
     Length=474
     Score =  941 bits (2432),  Expect = 0.0
     Identities = 472/474 (99%), Positives = 473/474 (99%), Gaps = 0/474 (0%)

gi|24984393|gb|AAN68409.1|  aldehyde dehydrogenase family protein [Pseudomonas putida KT2440]
     Length=474
     Score =  866 bits (2238),  Expect = 0.0
     Identities = 435/474 (91%), Positives = 449/474 (94%), Gaps = 0/474 (0%)

gi|48732663|ref|ZP_00266406.1|  COG1012: NAD-dependent aldehyde dehydrogenases [Pseudomonas
fluorescens PfO-1]
     Length=474
     Score =  733 bits (1892),  Expect = 0.0
     Identities = 353/474 (74%), Positives = 404/474 (85%), Gaps = 0/474 (0%)
Structural Features:
pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of dehydrogenases act 
on aldehyde substrates. Members use NADP as a cofactor.
             CD-Length = 464 residues,  97.6% aligned
             Score =  455 bits (1171), Expect = 8e-129

COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy production and conversion].
             CD-Length = 472 residues,  99.4% aligned
             Score =  440 bits (1132), Expect = 2e-124
Genomic Context:
Predicted gene #16 of the PAGI-1 island absent in PAO1 but present in a majority of pathogenic P. aeruginosa isolates.   
The PA14 island at this locus, from PA14_35860 to PA14_36030, corresponds to PAGI-1 genes 17 through 2, respectively.
Comment:
The first half of the PA14 island (from PA14_35700 through PA14_35850) diverges from PAGI-1 such that 
genes 18 through 51 are absent.  PA14 has 31 ORFs in 35368 bp (from PA14_35700 to PA14_36030), 
whereas PAGI-1 contains 51 ORFs in 51300 bp.
ReferenceID:8695
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25838
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:38206
Author/Investigator(s): Liang X, Pham XQ, Olson MV, Lory S.
Title: Identification of a genomic island present in the majority of pathogenic isolates of Pseudomonas aeruginosa.
PubMed: 11208781
MedLine:
Source:
J Bacteriol. 2001 Feb;183(3):843-53.
Reference Type:Journal
Data:
URL:
Homologs By Global Alignment
Gene ID:4347

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
179482 gb|AAK01506.1| (AF241171) putative aldehyde dehydrogenase [Pseudomonas aeruginosa] 479 98.53 98.74 5 2432.0
179483 gb|AAN68409.1|AE016473_7 (AE016784) aldehyde dehydrogenase family protein [Pseudomonas putida KT2440] 479 90.81 93.73 5 2238.0
179484 gb|AAN67103.1|AE016339_1 (AE016779) betaine aldehyde dehydrogenase, putative [Pseudomonas putida KT2440] 479 68.68 81.41 5 1763.0
179487 dbj|BAA15079.1| (D90784) Betaine-aldehyde dehydrogenase precursor (EC 1.2.1.8) (BADH). [Escherichia coli] 479 67.01 80.16 5 1731.0
179486 gb|AAC74526.1| (AE000241) putative aldehyde dehydrogenase [Escherichia coli K12] 479 67.01 80.16 5 1731.0
GC ORFID: 47349How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4073Glimmer Score:
Start: 1761560Stop: 1760121
Length: 1440
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4073 translation of PA4073Homolog Bit Score 324.0
Other Homologs: t_PA4073 (ORF: GLIMMER)
GC ORF Sequence
ATGGCGAGAATCGATATGCAAACCAAACTTCTGATCAATGGTGCCCTGGTGGCCGGCGAAAGCGAGAGCCAC
GCGGTGTACAACCCGTCCCAGGGCAACGTCCTGGTGCGAATTACCGAGGCCAGCGGCGCCCAGGTCCATGCC
GCGGTGCAGAGCGCGGATGCGGCCTTCGACGCCTGGTCGCAAACGCCGCCCAAGGATCGCGCGGCCCTGCTG
CTCAAGCTTGCCGAGCGCATCGATGCCCAGGCGCACGTGTTCGCTCGCCTGGAGGCGGACAACTGCGGCAAG
CCTTTCAACGCCGTGCTGCTGGACGAACTGCCCGCCGTGTCGGACGTGTTCCGTTTCTTTGCCGGCGCCGTG
CGCTGCCTGCAGGGCTCGGCGGCGGGAGAGTACGTCGCGGGGCATACTTCGATGATCCGCCGCGACGCGGTA
GGCGTGGTCGCCTCCATCGCGCCGTGGAACTATCCGTTGTTGATGGCAGCGTGGAAACTCGGCCCGGCATTG
GCCGGCGGCAACACCGTGGTGCTGAAACCGTCGGAGCACACGCCGCTGAGTACCTTGAAACTGGGCGAGCTG
CTTGCCGAGATCTTCCCCGCCGGCGTGGTCAACATCGTCCACGGTCGAGGTGCCTCGGTGGGTGAGCCGCTG
ACCAGCCATGCCCAGGTGCGCATGGTGTCGCTGACCGGCTCCGTGCGCACCGGCAGCCGGATCATCGAAGGT
ACGGCCGAGAGCGTGAAACGCATGCACATGGAGTTGGGGGGCAAGGCTCCTGTACTGATCTTCGACGATGCC
GACATCGACGCCGCCGTCGAAGGCATCCGCGCCTTCGGCTTCTACAACGCCGGCCAGGACTGTACCGCCGCG
TGCCGCCTCTATGTGCAGAAAGGGGTCTACCAGGAGTTCGTTCGCAAGCTCGGCGAGGCCGTATCCAGCATC
CGGTGCGGGCTGCCGGACGATCCGGCGACCGAGATGGGACCGCTGATCACCAAGGAGCATCTGGAGCGTGTC
GAGGGGTTCGTGAACCGGGCCAGGGAGTTGCCGCACATCGAAGTGGTCACCGGCGGCAAGCGCGCCGAGGGT
GCCGGCTTCTTCTTCGAGCCGACGGTCCTGGCCGGCGCTACACAGGAGGATGAGGTGGTGCGCCGCGAGATC
TTCGGCCCGGTGGTGACCGTCTCGTCGTTCGAGGATGAAGCCCAGGCGCTGGCTTGGGCGAACGACTCCGAC
TACGGCCTGGCGTCTTCGGTATGGACCGCCGATGTGGGGCGCGCTCATCGCCTGGCCGCCCGCCTGCAATAC
GGCTGCACCTGGGTCAACACCCACTTCATGCTGGTCAGCGAAATGCCCCACGGCGGGGTCAAGCTGTCCGGC
TACGGCAAGGACCTGTCGATGTACGGCCTGGAAGACTACACCGTGGTGCGCCACGTGATGTTCAAGCACTGA