ViewGene
Locus Name:
GeneID:
Location:

GeneID:4345
TrivialName: PA14_40700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40700
PAO1 Ortholog Locus:PA1841
Sequence Length:498
Protein Length:165
Start: 3635714
Stop: 3635217
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05230.1|AE004610_3 (AE004610) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 164/164 (100%), Positives = 164/164 (100%)
Sequence:
ATGAGTGCGAAAATGGACGAGCAGGCGCTTCTGGCGTTGCTCCGCGAGCTGGCCATCGACAGCCAGCGGGTC
GAGCATCCGGCCATCGCCTCCATCGAGGAATATTACGCGCAGGGCATCGAATTGCCCGACCAGGGCATCAAG
AACCTGTTCCTGCGCAACCGCAAGGGTACTCGCCACTACCTGGTGCTGCTCGACGAGCGCAAGGAGGCCGAC
CTGCCGGGCATCGCCGAACAGATCGGCGAAAGCCGCCTGTCGTTCGCCTCGGTCGAGCGCCTGCGCGAATAC
CTCGGCGTCGAACTGGGCTGCGTGACGCCTTTCGCGCTGGTCAACGATCCGCAGCACAGGGTCGAGGTGCTG
CTCGACGATGCCATTCGCCAGGACCAGTTGCTCGGTTTCCACCCGTTGGTGAATACCGCCACCGAGTGCATC
CGCTACGCAGACCTGCTGGCTTTCCTCGCCCACACGGGGCATGAACCGCGCCTGATCCGGGTGTAG
Translation:
MSAKMDEQALLALLRELAIDSQRVEHPAIASIEEYYAQGIELPDQGIKNLFLRNRKGTRHYLVLLDERKEAD
LPGIAEQIGESRLSFASVERLREYLGVELGCVTPFALVNDPQHRVEVLLDDAIRQDQLLGFHPLVNTATECI
RYADLLAFLAHTGHEPRLIRV*
AnnotationID:4351GeneID:4345
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 21:09:05
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1841
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL53642.1| (AE009677) PUTATIVE DNA-BINDING PROTEIN [Brucella melitensis 16M]
          Length = 173

 Score =  116 bits (290), Expect = 6e-26
 Identities = 67/154 (43%), Positives = 91/154 (59%), Gaps = 2/154 (1%)

>emb|CAB71308.1| (AJ130879) putative DNA-binding protein [Clostridium sticklandii]
          Length = 164

 Score =  110 bits (275), Expect = 3e-24
 Identities = 61/159 (38%), Positives = 96/159 (60%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8691




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25834




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37075




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4345_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4345
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6677
                           PA1841_tr
                           translation of PA1841
                           165
                           99.39
                           99.39
                           0
                           831.0
     

     
     
179477
                           gb|AAG05230.1|AE004610_3
                           (AE004610) hypothetical protein PA1841 [Pseudomonas aeruginosa PAO1]
                           165
                           99.39
                           99.39
                           0
                           831.0
     

     
     
179478
                           gb|AAQ60370.1|
                           (AE016919) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           171
                           41.52
                           54.97
                           11
                           310.0
     

     
     
179479
                           gb|AAL53642.1|
                           (AE009677) PUTATIVE DNA-BINDING PROTEIN [Brucella melitensis 16M]
                           176
                           38.06
                           52.84
                           14
                           287.0
     

     
     
179480
                           gb|AAN34066.1|AE014583_1
                           (AE014583) conserved hypothetical protein [Brucella suis 1330]
                           185
                           37.29
                           51.35
                           25
                           287.0
     

     






      

          
GC ORFID: 47347How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1841Glimmer Score: 

          
Start: 1318196Stop: 1318693

          
Length: 498


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1841 translation of PA1841Homolog Bit Score 324.0

          
Other Homologs:  t_PA1841 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGCGAAAATGGACGAGCAGGCGCTTCTGGCGTTGCTCCGCGAGCTGGCCATCGACAGCCAGCGGGTC 
GAGCATCCGGCCATCGCCTCCATCGAGGAATATTACGCGCAGGGCATCGAATTGCCCGACCAGGGCATCAAG 
AACCTGTTCCTGCGCAACCGCAAGGGTACTCGCCACTACCTGGTGCTGCTCGACGAGCGCAAGGAGGCCGAC 
CTGCCGGGCATCGCCGAACAGATCGGCGAAAGCCGCCTGTCGTTCGCCTCGGTCGAGCGCCTGCGCGAATAC 
CTCGGCGTCGAACTGGGCTGCGTGACGCCTTTCGCGCTGGTCAACGATCCGCAGCACAGGGTCGAGGTGCTG 
CTCGACGATGCCATTCGCCAGGACCAGTTGCTCGGTTTCCACCCGTTGGTGAATACCGCCACCGAGTGCATC 
CGCTACGCAGACCTGCTGGCTTTCCTCGCCCACACGGGGCATGAACCGCGCCTGATCCGGGTGTAG