ViewGene
Locus Name:
GeneID:
Location:

GeneID:4343
TrivialName: PA14_50620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50620
PAO1 Ortholog Locus:PA1065
Sequence Length:474
Protein Length:157
Start: 4498493
Stop: 4498020
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04454.1|AE004538_6 (AE004538) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/157 (98%), Positives = 155/157 (98%)
Sequence:
ATGCGCCCACGTTACCGAGCGTCCGGGCCTAGCTCAAGTCCGGATCGGACTTCATCGCAACCAGGGAGTCGA
TCGATGATCCAATGCAAGCGTGTATACGAACCGGCGTCTCCCGCCGATGGCCGGCGCGTACTGGTGGACCGG
CTGTGGCCGCGCGGCATCTGCAAGGAGGCCCTGGCCATGGACGACTGGCTGAAGGACGTGGCGCCCTCCAAC
GAGGTGCGCAAGCAGTTCTGCCACGATCCGGCACTCTTCGACAGCTTCCGTGAACACTACCGCGCCGAGTTG
CAGGCGCACCCGGAACATTGGTGGGGCCTGCTCGACTGCGCTCGCGAGGGCACCCTGACGCTGCTCTACGGC
GCCCACGACCAGCAGCACAACAATGCCGTGGTGCTGGCCGAGTTCCTCGAGGAAGAGCTGGACCGCCAGCAG
CCGGGCAGTTCGCCGACCTGCTACGCCGACCGCCTCTCCTGA
Translation:
MRPRYRASGPSSSPDRTSSQPGSRSMIQCKRVYEPASPADGRRVLVDRLWPRGICKEALAMDDWLKDVAPSN
EVRKQFCHDPALFDSFREHYRAELQAHPEHWWGLLDCAREGTLTLLYGAHDQQHNNAVVLAEFLEEELDRQQ
PGSSPTCYADRLS*
AnnotationID:4349GeneID:4343
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 16:04:52
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1065
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04343, COG3189
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam04343, DUF488, Protein of unknown function, DUF488. Score: 174, 4e-45
COG3189, Uncharacterized conserved protein [Function unknown]. Score: 171, 4e-44







   
Genomic Context:






   
Comment:


















    ReferenceID:8687




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25830




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4343
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6675
                           PA1065_tr
                           translation of PA1065
                           157
                           98.08
                           98.72
                           0
                           830.0
     

     
     
179414
                           gb|AAG04454.1|AE004538_6
                           (AE004538) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           157
                           98.08
                           98.72
                           0
                           830.0
     

     
     
179415
                           gb|AAN69686.1|AE016604_8
                           (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440]
                           157
                           49.04
                           57.32
                           29
                           395.0
     

     
     
179419
                           emb|CAD85314.1|
                           (BX321860) putative uroporphyrin-III C-methyltransferase [Nitrosomonas europaea ATCC 19718]
                           160
                           40.62
                           51.25
                           48
                           305.0
     

     
     
179422
                           emb|CAE36879.1|
                           (BX640427) conserved hypothetical protein [Bordetella parapertussis]
                           159
                           40.25
                           51.57
                           34
                           290.0
     

     






      

          
GC ORFID: 47345How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1065Glimmer Score: 

          
Start: 455415Stop: 455888

          
Length: 474


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1065 translation of PA1065Homolog Bit Score 324.0

          
Other Homologs:  t_PA1065 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCCACGTTACCGAGCGTCCGGGCCTAGCTCAAGTCCGGATCGGACTTCATCGCAACCAGGGAGTCGA 
TCGATGATCCAATGCAAGCGTGTATACGAACCGGCGTCTCCCGCCGATGGCCGGCGCGTACTGGTGGACCGG 
CTGTGGCCGCGCGGCATCTGCAAGGAGGCCCTGGCCATGGACGACTGGCTGAAGGACGTGGCGCCCTCCAAC 
GAGGTGCGCAAGCAGTTCTGCCACGATCCGGCACTCTTCGACAGCTTCCGTGAACACTACCGCGCCGAGTTG 
CAGGCGCACCCGGAACATTGGTGGGGCCTGCTCGACTGCGCTCGCGAGGGCACCCTGACGCTGCTCTACGGC 
GCCCACGACCAGCAGCACAACAATGCCGTGGTGCTGGCCGAGTTCCTCGAGGAAGAGCTGGACCGCCAGCAG 
CCGGGCAGTTCGCCGACCTGCTACGCCGACCGCCTCTCCTGA