ViewGene
Locus Name:
GeneID:
Location:

GeneID:4342
TrivialName: PA14_53430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53430
PAO1 Ortholog Locus:PA0837
Sequence Length:486
Protein Length:161
Start: 4738517
Stop: 4738032
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04226.1|AE004518_7 (AE004518) peptidyl-prolyl cis-trans isomerase SlyD [Pseudomonas aeruginosa PAO1]
Identities = 161/161 (100%), Positives = 161/161 (100%)
Sequence:
ATGCAGATCGCGGCCAACAAGGCGGTTTCCATCGACTATACCCTGACCAACGACGCCGGGGATGTCATCGAC
AGTTCCGCTGGTGGCGCGCCGCTGGTCTACCTGCACGGTGCCGGCAACATCATCGTCGGCCTGGAGAAGGCC
CTGGAAGGCAAGAACGTCGGTGACGAACTGAGCGTCGCCATCGAGCCGGAAGACGCCTATGGCGAATACAGC
GCCGAACTGGTCGCGACCCTGACCCGCGAGATGTTCGAAGGCGTCGACGAACTGGAAGTCGGCATGCAGTTC
CACGCCTCGGCTCCGGACGGCGGCATGCAGATCGTCACCATCCGCGACATCGACGGCGACGACGTGACCGTC
GATGGCAACCATCCGCTGGCCGGCCAGCGCCTGAACTTCAAGGTCAAGGTAGTCGACGTGCGCGAGGCCAAC
GCCGAGGAAATCGCCCATGGTCACATCCATGGCGAAGGCGGTCACCACCACTGA
Translation:
MQIAANKAVSIDYTLTNDAGDVIDSSAGGAPLVYLHGAGNIIVGLEKALEGKNVGDELSVAIEPEDAYGEYS
AELVATLTREMFEGVDELEVGMQFHASAPDGGMQIVTIRDIDGDDVTVDGNHPLAGQRLNFKVKVVDVREAN
AEEIAHGHIHGEGGHHH*
AnnotationID:4348GeneID:4342
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 15:03:05
Gene Name:slyD
Confidence Code:2
GeneProduct:peptidyl-prolyl cis-trans isomerase SlyD
Cell Localization:()
Synonyms:PA0837
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(9) Chaperones & heat shock proteins
Alternate Gene Product Name:rotamase
Functional Category Confidence Code:5
COGs:COG1047
Secondary Functional Category(ies):Translation, post-translational modification, degradation.
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2
[Posttranslational modification, protein turnover, chaperones]
       CD-Length = 174 residues,  92.5% aligned
       Score =  178 bits (454), Expect = 4e-46






   
Genomic Context:






   
Comment:


















    ReferenceID:8685




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25828




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4342
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6674
                           PA0837_tr
                           translation of PA0837
                           161
                           99.99
                           99.99
                           0
                           830.0
     

     
     
179370
                           gb|AAG04226.1|AE004518_7
                           (AE004518) peptidyl-prolyl cis-trans isomerase SlyD [Pseudomonas aeruginosa PAO1]
                           161
                           99.99
                           99.99
                           0
                           830.0
     

     
     
179372
                           gb|AAN66401.1|AE016267_10
                           (AE016776) peptidyl-prolyl cis-trans isomerase, FKBP-type [Pseudomonas putida KT2440]
                           161
                           86.33
                           92.54
                           0
                           722.0
     

     
     
179371
                           gb|AAO54698.1|
                           (AE016860) peptidyl-prolyl cis-trans isomerase, FKBP-type [Pseudomonas syringae pv. tomato str. DC3000]
                           161
                           85.09
                           92.54
                           0
                           726.0
     

     
     
179403
                           gb|AAF12003.1|AE002075_7
                           (AE002075) peptidyl-prolyl cis-trans isomerase, FKBP-type [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           163
                           45.39
                           60.73
                           7
                           338.0
     

     






      

          
GC ORFID: 47344How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0837Glimmer Score: 

          
Start: 215390Stop: 215875

          
Length: 486


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0837 translation of PA0837Homolog Bit Score 324.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4339 (ORF: BLASTX 280.0), t_PA0837 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGATCGCGGCCAACAAGGCGGTTTCCATCGACTATACCCTGACCAACGACGCCGGGGATGTCATCGAC 
AGTTCCGCTGGTGGCGCGCCGCTGGTCTACCTGCACGGTGCCGGCAACATCATCGTCGGCCTGGAGAAGGCC 
CTGGAAGGCAAGAACGTCGGTGACGAACTGAGCGTCGCCATCGAGCCGGAAGACGCCTATGGCGAATACAGC 
GCCGAACTGGTCGCGACCCTGACCCGCGAGATGTTCGAAGGCGTCGACGAACTGGAAGTCGGCATGCAGTTC 
CACGCCTCGGCTCCGGACGGCGGCATGCAGATCGTCACCATCCGCGACATCGACGGCGACGACGTGACCGTC 
GATGGCAACCATCCGCTGGCCGGCCAGCGCCTGAACTTCAAGGTCAAGGTAGTCGACGTGCGCGAGGCCAAC 
GCCGAGGAAATCGCCCATGGTCACATCCATGGCGAAGGCGGTCACCACCACTGA