ViewGene
Locus Name:
GeneID:
Location:

GeneID:4341
TrivialName: PA14_68970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68970
PAO1 Ortholog Locus:PA5222
Sequence Length:483
Protein Length:160
Start: 6152695
Stop: 6152213
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08607.1|AE004935_4 (AE004935) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 160/160 (100%), Positives = 160/160 (100%)
Sequence:
ATGCCGGTCTGGTCGAGGGCGCGCAAGGCCCGCCTGCTGCGCTTCGCCATGAACCTCTACCCGCCCTTCCTG
GGGGCGGGCATCCGTGTGCGGCACATCGCTGGCGATTTTCGCGAGGTTCGGGTGCGTATGGGCCTGAACCGG
CTCAATCGCAACTATGTAGGCACCCAGTTCGGTGGCAGCCTCTACGCGATGACCGACCCGTTCTTCATGCTG
ATGCTGATGGAGAACCTGGGCCGCGACTACGTGGTCTGGGACAAGGCGGCCAACATCGAGTTCGTCAGCCCG
GGCAAGGGCCCGGTGCATGCGCATTTCAGCATCGACCAGAAGCTGCTCGACGAGGTCCGTGAGCGGACCGCC
GGCGGCGAGAAGTACCTGCCCCGGCTGCACGCCGAAGTGCGCGACGACGCCGGCACCCTGGTGGCGCGGGTT
CAGAAAACCCTGTACGTGCGGCTCAAGCCGCGCCTGCGGAACGCGGCCTGA
Translation:
MPVWSRARKARLLRFAMNLYPPFLGAGIRVRHIAGDFREVRVRMGLNRLNRNYVGTQFGGSLYAMTDPFFML
MLMENLGRDYVVWDKAANIEFVSPGKGPVHAHFSIDQKLLDEVRERTAGGEKYLPRLHAEVRDDAGTLVARV
QKTLYVRLKPRLRNAA*
AnnotationID:4347GeneID:4341
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 06:06:14
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5222
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8683




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25826




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34833




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4341_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4341
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6673
                           PA5222_tr
                           translation of PA5222
                           160
                           99.99
                           99.99
                           0
                           833.0
     

     
     
179358
                           gb|AAG08607.1|AE004935_4
                           (AE004935) hypothetical protein PA5222 [Pseudomonas aeruginosa PAO1]
                           160
                           99.99
                           99.99
                           0
                           833.0
     

     
     
179359
                           gb|AAN70763.1|AE016720_6
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           164
                           64.63
                           79.26
                           8
                           563.0
     

     
     
179360
                           gb|AAQ61014.1|
                           (AE016922) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           162
                           54.32
                           67.90
                           11
                           461.0
     

     
     
179362
                           gb|AAM37629.1|
                           (AE011919) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           160
                           50.00
                           64.37
                           11
                           404.0
     

     






      

          
GC ORFID: 47343How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5222Glimmer Score: 

          
Start: 5416382Stop: 5415900

          
Length: 483


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5222 translation of PA5222Homolog Bit Score 325.0

          
Other Homologs:  t_PA5222 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGGTCTGGTCGAGGGCGCGCAAGGCCCGCCTGCTGCGCTTCGCCATGAACCTCTACCCGCCCTTCCTG 
GGGGCGGGCATCCGTGTGCGGCACATCGCTGGCGATTTTCGCGAGGTTCGGGTGCGTATGGGCCTGAACCGG 
CTCAATCGCAACTATGTAGGCACCCAGTTCGGTGGCAGCCTCTACGCGATGACCGACCCGTTCTTCATGCTG 
ATGCTGATGGAGAACCTGGGCCGCGACTACGTGGTCTGGGACAAGGCGGCCAACATCGAGTTCGTCAGCCCG 
GGCAAGGGCCCGGTGCATGCGCATTTCAGCATCGACCAGAAGCTGCTCGACGAGGTCCGTGAGCGGACCGCC 
GGCGGCGAGAAGTACCTGCCCCGGCTGCACGCCGAAGTGCGCGACGACGCCGGCACCCTGGTGGCGCGGGTT 
CAGAAAACCCTGTACGTGCGGCTCAAGCCGCGCCTGCGGAACGCGGCCTGA