ViewGene
Locus Name:
GeneID:
Location:

GeneID:4340
TrivialName: PA14_27520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27520
PAO1 Ortholog Locus:PA2826
Sequence Length:486
Protein Length:161
Start: 2388940
Stop: 2389425
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06214.1|AE004709_7 (AE004709) probable glutathione peroxidase [Pseudomonas aeruginosa PAO1]
Identities = 160/161 (99%), Positives = 160/161 (99%)
Sequence:
ATGAGCGATTCTCTGCTGAGCATTCCCTGCACCACCATCAAGGGCGAACAGAAGACCCTGGCCGATTTCGGC
GGCAAGGCGCTGCTGGTGGTGAACACCGCCAGCAAGTGCGGCTTCACCCCGCAGTACCAGGGGCTGGAGGCC
TTGTGGGAAAAATACCGTGAGCGCGGACTGGTGGTGCTCGGCTTCCCCTGCAACCAGTTCGGCAAGCAGGAA
CCGGGCGACGAGGGCGAGATTTCGCAGTTCTGCGAGCTGAACTACGGGGTGAGCTTCCCGCTGTTCAGGAAG
ATCGAGGTCAACGGCGCCGGCGCCCACCCGTTGTTCGTCAGCCTGAAGAAGCGCGCGCTGGGCCTGCTCGGC
AGCCAGGGCATCAAGTGGAACTTCACCAAGTTCCTGATCGGCCGCGATGGCCAGGTGGTGAAGCGCTACGCG
CCGACCACCAAGCCGGAGGAGCTGAGTTCGGCGATCGAGGCGCTGCTTGAATGA
Translation:
MSDSLLSIPCTTIKGEQKTLADFGGKALLVVNTASKCGFTPQYQGLEALWEKYRERGLVVLGFPCNQFGKQE
PGDEGEISQFCELNYGVSFPLFRKIEVNGAGAHPLFVSLKKRALGLLGSQGIKWNFTKFLIGRDGQVVKRYA
PTTKPEELSSAIEALLE*
AnnotationID:4346GeneID:4340
AnnotatorUID: diggins
Modification Date/Time: 2005-06-10 18:06:45
Gene Name:
Confidence Code:3
GeneProduct:putative glutathione peroxidase
Cell Localization:()
Synonyms:gpo
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0386,pfam00255
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:1.11.1.9
Status:ACTIVE
Pathway:
Glutathione metabolism
Homology:
>gb|AAO55301.1| (AE016862) glutathione peroxidase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 161

 Score =  266 bits (679), Expect = 4e-71
 Identities = 125/160 (78%), Positives = 146/160 (91%)

>gb|AAN67493.1|AE016376_3 (AE016780) glutathione peroxidase [Pseudomonas putida KT2440]
          Length = 162

 Score =  247 bits (630), Expect = 2e-65
 Identities = 117/160 (73%), Positives = 134/160 (83%)

>gb|AAM40710.1| (AE012241) glutathione peroxidase-like protein [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 161

 Score =  215 bits (548), Expect = 7e-56
 Identities = 98/150 (65%), Positives = 122/150 (81%)
Structural Features:
COG0386, BtuE, Glutathione peroxidase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 162 residues,  99.4% aligned
Score =  262 bits (671), Expect = 2e-71
Identities = 98/161 (60%), Positives = 125/161 (77%)

pfam00255, GSHPx, Glutathione peroxidase
CD-Length = 109 residues, 100.0% aligned
Score =  147 bits (372), Expect = 7e-37
Identities = 61/109 (55%), Positives = 72/109 (66%)
Genomic Context:






   
Comment:


















    ReferenceID:8681




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25824




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36234




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4340_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4340
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6670
                           PA2826_tr
                           translation of PA2826
                           161
                           99.37
                           99.37
                           0
                           834.0
     

     
     
179250
                           gb|AAG06214.1|AE004709_7
                           (AE004709) probable glutathione peroxidase [Pseudomonas aeruginosa PAO1]
                           161
                           99.37
                           99.37
                           0
                           834.0
     

     
     
179251
                           gb|AAO55301.1|
                           (AE016862) glutathione peroxidase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           161
                           77.63
                           90.68
                           0
                           679.0
     

     
     
179252
                           gb|AAN67493.1|AE016376_3
                           (AE016780) glutathione peroxidase [Pseudomonas putida KT2440]
                           162
                           72.22
                           82.71
                           1
                           630.0
     

     
     
179259
                           emb|CAE29068.1|
                           (BX572604) putative glutathione peroxidase [Rhodopseudomonas palustris CGA009]
                           161
                           62.73
                           72.67
                           3
                           522.0
     

     






      

          
GC ORFID: 47342How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2826Glimmer Score: 

          
Start: 2564987Stop: 2564502

          
Length: 486


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2826 translation of PA2826Homolog Bit Score 325.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7762 (ORF: BLASTX 268.0), t_PA0838 (ORF: BLASTX 163.0), psyr_15may02_Scaffold3_revised_gene4341 (ORF: BLASTX 147.0), t_PA2826 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGATTCTCTGCTGAGCATTCCCTGCACCACCATCAAGGGCGAACAGAAGACCCTGGCCGATTTCGGC 
GGCAAGGCGCTGCTGGTGGTGAACACCGCCAGCAAGTGCGGCTTCACCCCGCAGTACCAGGGGCTGGAGGCC 
TTGTGGGAAAAATACCGTGAGCGCGGACTGGTGGTGCTCGGCTTCCCCTGCAACCAGTTCGGCAAGCAGGAA 
CCGGGCGACGAGGGCGAGATTTCGCAGTTCTGCGAGCTGAACTACGGGGTGAGCTTCCCGCTGTTCAGGAAG 
ATCGAGGTCAACGGCGCCGGCGCCCACCCGTTGTTCGTCAGCCTGAAGAAGCGCGCGCTGGGCCTGCTCGGC 
AGCCAGGGCATCAAGTGGAACTTCACCAAGTTCCTGATCGGCCGCGATGGCCAGGTGGTGAAGCGCTACGCG 
CCGACCACCAAGCCGGAGGAGCTGAGTTCGGCGATCGAGGCGCTGCTTGAATGA