ViewGene

Locus Name:
GeneID:
Location:

GeneID:4339
TrivialName: PA14_53420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53420
PAO1 Ortholog Locus:PA0838
Sequence Length:483
Protein Length:160
Start: 4737826
Stop: 4737344
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04227.1|AE004518_8 (AE004518) probable glutathione peroxidase [Pseudomonas aeruginosa PAO1]
Identities = 159/160 (99%), Positives = 159/160 (99%)
Sequence:
ATGAGTGCCTTTCACGATCTCACCCTGCTGGGGTTGGATGGACAGGACCTGCCGCTTTCCCCGTTCAAGGGC
AAGGTGCTGCTGGTGGTCAATGTCGCCTCCAAATGCGGCCTGACACCCCAGTACGCTGGCCTGGAGAATCTC
TACCAGACCTACCGCGAGCGCGGTTTCGCGGTGCTCGGCGTGCCCTGCAACCAGTTCGCCGGGCAGGAGCCG
GGCAGCGAGGCGGATATCCAGTCCTTCTGCAGCCTGAACTATGGCGTCAGCTTCCCGATGAGCGCCAAGGTC
GAGGTCAACGGCAGCGCGCGGCATCCGCTCTATCGCCTGCTGGCGGGCGAGGGCGCGGAGTTTCCCGGCGAC
ATCACCTGGAACTTCGAGAAATTCCTCCTCGGTCCCGACGGTCGCGTGCTGGCGCGTTTCAGCCCGCGCACG
GCGCCGGACGACCCGGCCCTGGTGCAAGCCATCGAGAAGGCCCTGGGTTGA
Translation:
MSAFHDLTLLGLDGQDLPLSPFKGKVLLVVNVASKCGLTPQYAGLENLYQTYRERGFAVLGVPCNQFAGQEP
GSEADIQSFCSLNYGVSFPMSAKVEVNGSARHPLYRLLAGEGAEFPGDITWNFEKFLLGPDGRVLARFSPRT
APDDPALVQAIEKALG*
AnnotationID:4345GeneID:4339
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 15:03:19
Gene Name:
Confidence Code:3
GeneProduct:probable glutathione peroxidase
Cell Localization:()
Synonyms:PA0838, btuE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0386, KOG1651, pfam00255
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0386, BtuE, Glutathione peroxidase. Score: 248, 5e-67
KOG1651, Glutathione peroxidase. Score: 190, 1e-49
pfam00255, GSHPx, Glutathione peroxidase.  Score: 145, 4e-36
Genomic Context:
Comment:
ReferenceID:8679
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25822
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4339

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6667 PA0838_tr translation of PA0838 160 99.37 99.37 0 833.0
179146 gb|AAG04227.1|AE004518_8 (AE004518) probable glutathione peroxidase [Pseudomonas aeruginosa PAO1] 160 99.37 99.37 0 833.0
179147 gb|AAN66402.1|AE016268_1 (AE016776) glutathione peroxidase, putative [Pseudomonas putida KT2440] 160 80.62 90.00 0 695.0
179148 gb|AAO54699.1| (AE016860) glutathione peroxidase family protein [Pseudomonas syringae pv. tomato str. DC3000] 162 73.45 84.56 2 651.0
179155 gb|AAM40710.1| (AE012241) glutathione peroxidase-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913] 166 54.81 67.46 11 448.0
GC ORFID: 47341How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0838Glimmer Score:
Start: 216081Stop: 216563
Length: 483
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0838 translation of PA0838Homolog Bit Score 325.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4341 (ORF: BLASTX 246.0), t_PA2826 (ORF: BLASTX 163.0), psyr_15may02_Scaffold8_revised_gene7762 (ORF: BLASTX 159.0), t_PA0838 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTGCCTTTCACGATCTCACCCTGCTGGGGTTGGATGGACAGGACCTGCCGCTTTCCCCGTTCAAGGGC
AAGGTGCTGCTGGTGGTCAATGTCGCCTCCAAATGCGGCCTGACACCCCAGTACGCTGGCCTGGAGAATCTC
TACCAGACCTACCGCGAGCGCGGTTTCGCGGTGCTCGGCGTGCCCTGCAACCAGTTCGCCGGGCAGGAGCCG
GGCAGCGAGGCGGATATCCAGTCCTTCTGCAGCCTGAACTATGGCGTCAGCTTCCCGATGAGCGCCAAGGTC
GAGGTCAACGGCAGCGCGCGGCATCCGCTCTATCGCCTGCTGGCGGGCGAGGGCGCGGAGTTTCCCGGCGAC
ATCACCTGGAACTTCGAGAAATTCCTCCTCGGTCCCGACGGTCGCGTGCTGGCGCGTTTCAGCCCGCGCACG
GCGCCGGACGACCCGGCCCTGGTGCAAGCCATCGAGAAGGCCCTGGGTTGA