ViewGene
Locus Name:
GeneID:
Location:

GeneID:4338
TrivialName: PA14_69400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69400
PAO1 Ortholog Locus:PA5256
Sequence Length:492
Protein Length:163
Start: 6190384
Stop: 6189893
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08641.1|AE004938_3 (AE004938) disulfide bond formation protein [Pseudomonas aeruginosa PAO1]
Identities = 163/163 (100%), Positives = 163/163 (100%)
Sequence:
ATGCCCCTGGCCAGCCCCCGTCAGCTTTTCCTTCTCGCGTTCCTGGCCTGCGTCGCCATCATGGGCGGGGCG
CTGTACCTGGAACATGTGGTTGGCCTGGAGGCCTGCCCGCTGTGCGTCGTGCAGCGGATCTTCTTCATCCTG
ATCGGCCTGACCTGCCTCGCTGGCGCGATCCAGGGGCCCGGCCTGCGTGGGCGGCGTATCTACTCCGTGCTG
GTGTTCCTGCTCGCTCTCGGCGGCGGGGCCACGGCCGCCCGCCAGGTATGGTTGCAGACCGTTCCGCTGGAC
CAACTGCCGGCCTGCCTGCCCAGCCTCGACTACATGATGCAGGCGCTTCCCTTCCAGGAAGTGATCCGCCTG
GTCCTGCACGGCACCGCGGATTGTGCCCAGGTGAGCTGGACGCTGTTCACCCTGAGCATTCCGGAATGGAGC
CTGCTGGCGTTCGTTGCCTATCTCGGTTTCTCCATCGTGCAGTTCCTCCGACGTGCCTGA
Translation:
MPLASPRQLFLLAFLACVAIMGGALYLEHVVGLEACPLCVVQRIFFILIGLTCLAGAIQGPGLRGRRIYSVL
VFLLALGGGATAARQVWLQTVPLDQLPACLPSLDYMMQALPFQEVIRLVLHGTADCAQVSWTLFTLSIPEWS
LLAFVAYLGFSIVQFLRRA*
AnnotationID:4344GeneID:4338
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 07:07:30
Gene Name:dsbH
Confidence Code:2
GeneProduct:putative disulfide bond formation protein DsbB
Cell Localization:()
Synonyms:dsbB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1495
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1495, DsbB, Disulfide bond formation protein DsbB 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 170 residues,  94.7% aligned
Score = 89.3 bits (221), Expect = 2e-19
Identities = 54/165 (32%), Positives = 72/165 (43%), Gaps = 6/165 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8677




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25820




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34826




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4338_cdd.html


    		




 
URL:

















    ReferenceID:35742




  
Author/Investigator(s):
        Missiakas D, Georgopoulos C, Raina S.





  
Title:
        Identification and characterization of the Escherichia coli gene dsbB, whose product is involved in the formation of disulfide bonds in vivo.




  
PubMed:
        7688471


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 1993 Aug 1;90(15):7084-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7688471

















    ReferenceID:35743




  
Author/Investigator(s):
        Kwon AR, Oh TG, Kim DH, Choi EC.





  
Title:
        Molecular cloning of the arylsulfate sulfotransferase gene and characterization of its product from Enterobacter amnigenus AR-37.




  
PubMed:
        10600454


MedLine:
        




    
Source:
Protein Expr Purif. 1999 Dec;17(3):366-72.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10600454









           
Homologs By Global Alignment 

           

       



     
Gene ID:4338
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6666
                           PA5256_tr
                           translation of PA5256
                           163
                           99.99
                           99.99
                           0
                           835.0
     

     
     
179142
                           gb|AAG08641.1|AE004938_3
                           (AE004938) disulfide bond formation protein [Pseudomonas aeruginosa PAO1]
                           163
                           99.99
                           99.99
                           0
                           835.0
     

     
     
179143
                           gb|AAM40231.1|
                           (AE012190) disulfide bond formation protein B [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           181
                           39.22
                           51.93
                           27
                           316.0
     

     
     
179144
                           gb|AAM35881.1|
                           (AE011729) disulfide bond formation protein B [Xanthomonas axonopodis pv. citri str. 306]
                           180
                           38.88
                           53.88
                           25
                           319.0
     

     
     
179145
                           gb|AAO53686.1|
                           (AE016856) DsbB family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           175
                           35.42
                           49.14
                           12
                           283.0
     

     






      

          
GC ORFID: 47340How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5256Glimmer Score: 

          
Start: 5454071Stop: 5453580

          
Length: 492


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5256 translation of PA5256Homolog Bit Score 326.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4070 (ORF: BLASTX 127.0), t_PA5256 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCTGGCCAGCCCCCGTCAGCTTTTCCTTCTCGCGTTCCTGGCCTGCGTCGCCATCATGGGCGGGGCG 
CTGTACCTGGAACATGTGGTTGGCCTGGAGGCCTGCCCGCTGTGCGTCGTGCAGCGGATCTTCTTCATCCTG 
ATCGGCCTGACCTGCCTCGCTGGCGCGATCCAGGGGCCCGGCCTGCGTGGGCGGCGTATCTACTCCGTGCTG 
GTGTTCCTGCTCGCTCTCGGCGGCGGGGCCACGGCCGCCCGCCAGGTATGGTTGCAGACCGTTCCGCTGGAC 
CAACTGCCGGCCTGCCTGCCCAGCCTCGACTACATGATGCAGGCGCTTCCCTTCCAGGAAGTGATCCGCCTG 
GTCCTGCACGGCACCGCGGATTGTGCCCAGGTGAGCTGGACGCTGTTCACCCTGAGCATTCCGGAATGGAGC 
CTGCTGGCGTTCGTTGCCTATCTCGGTTTCTCCATCGTGCAGTTCCTCCGACGTGCCTGA