ViewGene
Locus Name:
GeneID:
Location:

GeneID:4337
TrivialName: PA14_14710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14710
PAO1 Ortholog Locus:PA3815
Sequence Length:492
Protein Length:163
Start: 1253836
Stop: 1254327
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07202.1|AE004799_8 (AE004799) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 163/163 (100%), Positives = 163/163 (100%)
Sequence:
ATGCGTCTGACCACCAAAGGCCGCTACGCCGTAACCGCCATGCTCGACCTGGCGCTGCATGCTCAGCAAGGT
CCGGTCTCGCTGGCCGATATCTCCGAACGCCAAGGCATTTCCCTGTCCTATCTCGAACAGCTGTTCGCCAAG
TTGCGCCGTGGCAACCTGGTGACCAGCGTGCGCGGCCCGGGCGGCGGCTACCAGCTGTCCCGCCATATGTCG
GGCATCCATGTGGCGCAGGTGATCGACGCGGTCAACGAATCCGTCGACGCGACTCGCTGCCAGGGGCAGGGC
GATTGCCACTCCGGCGATACCTGTCTGACCCACCACCTGTGGTGCGACCTCAGTTTGCAGATCCATGAGTTC
CTCAGCGGCATCAGCCTGGCCGATCTGGTCAGCCGCCAGGAGGTCCAGGAGGTCGCGCTGCGCCAGGACGAA
CGCCGTTGCTCAGGCAAGACGCCTCGTCTCGACAAGATTGAAGCGTCCGCCATCGACTGA
Translation:
MRLTTKGRYAVTAMLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRGPGGGYQLSRHMS
GIHVAQVIDAVNESVDATRCQGQGDCHSGDTCLTHHLWCDLSLQIHEFLSGISLADLVSRQEVQEVALRQDE
RRCSGKTPRLDKIEASAID*
AnnotationID:4343GeneID:4337
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 12:12:35
Gene Name:
Confidence Code:3
GeneProduct:putative Rrf2 family protein
Cell Localization:()
Synonyms:PA3815
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02082,COG1959
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54943.1| (AE016860) rrf2 family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 163

 Score =  278 bits (712), Expect = 7e-75
 Identities = 140/163 (85%), Positives = 148/163 (90%)

>gb|AAN17744.1| (AY138456) putative iron-sulfur cluster regulator protein IscR
           [Xenorhabdus nematophila]
          Length = 164

 Score =  197 bits (500), Expect = 3e-50
 Identities = 104/155 (67%), Positives = 120/155 (77%), Gaps = 2/155 (1%)






 
Structural Features:
pfam02082, Rrf2, Transcriptional regulator. 
CD-Length = 120 residues, 100.0% aligned
Score =  158 bits (402), Expect = 5e-40
Identities = 64/120 (53%), Positives = 82/120 (68%)

COG1959, Predicted transcriptional regulator [Transcription]
CD-Length = 150 residues,  99.3% aligned
Score =  150 bits (381), Expect = 1e-37
Identities = 61/149 (40%), Positives = 82/149 (55%), Gaps = 1/149 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8675




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25818




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31741




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type: (text/plain)







    
Data:4337_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4337
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6665
                           PA3815_tr
                           translation of PA3815
                           163
                           99.99
                           99.99
                           0
                           836.0
     

     
     
179102
                           gb|AAG07202.1|AE004799_8
                           (AE004799) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           163
                           99.99
                           99.99
                           0
                           836.0
     

     
     
179103
                           gb|AAO54943.1|
                           (AE016860) rrf2 family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           163
                           85.88
                           90.79
                           0
                           712.0
     

     
     
179104
                           gb|AAN66466.1|AE016276_1
                           (AE016777) rrf2 family protein [Pseudomonas putida KT2440]
                           163
                           85.27
                           91.41
                           0
                           708.0
     

     
     
179105
                           gb|AAC24480.1|
                           (AF010139) unknown [Azotobacter vinelandii]
                           164
                           78.04
                           84.75
                           1
                           633.0
     

     






      

          
GC ORFID: 47339How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3815Glimmer Score: 

          
Start: 3700102Stop: 3699611

          
Length: 492


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3815 translation of PA3815Homolog Bit Score 326.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4516 (ORF: BLASTX 276.0), t_PA3815 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTCTGACCACCAAAGGCCGCTACGCCGTAACCGCCATGCTCGACCTGGCGCTGCATGCTCAGCAAGGT 
CCGGTCTCGCTGGCCGATATCTCCGAACGCCAAGGCATTTCCCTGTCCTATCTCGAACAGCTGTTCGCCAAG 
TTGCGCCGTGGCAACCTGGTGACCAGCGTGCGCGGCCCGGGCGGCGGCTACCAGCTGTCCCGCCATATGTCG 
GGCATCCATGTGGCGCAGGTGATCGACGCGGTCAACGAATCCGTCGACGCGACTCGCTGCCAGGGGCAGGGC 
GATTGCCACTCCGGCGATACCTGTCTGACCCACCACCTGTGGTGCGACCTCAGTTTGCAGATCCATGAGTTC 
CTCAGCGGCATCAGCCTGGCCGATCTGGTCAGCCGCCAGGAGGTCCAGGAGGTCGCGCTGCGCCAGGACGAA 
CGCCGTTGCTCAGGCAAGACGCCTCGTCTCGACAAGATTGAAGCGTCCGCCATCGACTGA