ViewGene
Locus Name:
GeneID:
Location:

GeneID:4336
TrivialName: PA14_28030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28030
PAO1 Ortholog Locus:PA2790
Sequence Length:486
Protein Length:161
Start: 2426498
Stop: 2426013
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06178.1|AE004706_8 (AE004706) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 155/161 (96%), Positives = 159/161 (98%)
Sequence:
ATGGGCAGATCGAGCAGTCCGCGCGTAGGATGGGCAGGCACGCTTCCTGCCCATTTTCCGCCAGGAAAAGAA
AGGAATTCCTTTCCGAGATTTCCACAGAGGTCATGGATGAAAAAAAGCCCCCTGCTGATACTGAGCGTACTC
CTCGCCGCCTGCGGCCCCGACAAGCTGATTTCCGACCTGCCGTCGCCGAACGGGCAATACCACGTCGAGGTT
CGGAAATGCCCGGAGAAAGGTTCGATCACCTGGGGCGAAGAAATACAGGTCTCCCTCCTCGAAACCGGGAAA
TCGGAAAAGTGCCATTCAGTCGTGCAGTCGCTGGCGCAATTCGACCTGCGCGCGTCCGCGGACGAATTGCAA
CTGGAGTGGCTGTCCGACACGGAACTCAGGGCCTGGCACCCTAGCTTCGAGCCCGGAAACCAAGCGGACGGC
TCGCGCCTGAAGCACGATGCGCCGGTGAAGATGGTCTTTGCACCGAAGCGCTGA
Translation:
MGRSSSPRVGWAGTLPAHFPPGKERNSFPRFPQRSWMKKSPLLILSVLLAACGPDKLISDLPSPNGQYHVEV
RKCPEKGSITWGEEIQVSLLETGKSEKCHSVVQSLAQFDLRASADELQLEWLSDTELRAWHPSFEPGNQADG
SRLKHDAPVKMVFAPKR*
AnnotationID:4342GeneID:4336
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 03:03:10
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2790
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8673




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25816




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4336
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6664
                           PA2790_tr
                           translation of PA2790
                           161
                           96.27
                           98.75
                           0
                           836.0
     

     
     
179101
                           gb|AAG06178.1|AE004706_8
                           (AE004706) hypothetical protein PA2790 [Pseudomonas aeruginosa PAO1]
                           161
                           96.27
                           98.75
                           0
                           836.0
     

     






      

          
GC ORFID: 47338How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2790Glimmer Score: 

          
Start: 2527428Stop: 2527913

          
Length: 486


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2790 translation of PA2790Homolog Bit Score 326.0

          
Other Homologs:  t_PA2790 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCAGATCGAGCAGTCCGCGCGTAGGATGGGCAGGCACGCTTCCTGCCCATTTTCCGCCAGGAAAAGAA 
AGGAATTCCTTTCCGAGATTTCCACAGAGGTCATGGATGAAAAAAAGCCCCCTGCTGATACTGAGCGTACTC 
CTCGCCGCCTGCGGCCCCGACAAGCTGATTTCCGACCTGCCGTCGCCGAACGGGCAATACCACGTCGAGGTT 
CGGAAATGCCCGGAGAAAGGTTCGATCACCTGGGGCGAAGAAATACAGGTCTCCCTCCTCGAAACCGGGAAA 
TCGGAAAAGTGCCATTCAGTCGTGCAGTCGCTGGCGCAATTCGACCTGCGCGCGTCCGCGGACGAATTGCAA 
CTGGAGTGGCTGTCCGACACGGAACTCAGGGCCTGGCACCCTAGCTTCGAGCCCGGAAACCAAGCGGACGGC 
TCGCGCCTGAAGCACGATGCGCCGGTGAAGATGGTCTTTGCACCGAAGCGCTGA