ViewGene
Locus Name:
GeneID:
Location:

GeneID:4335
TrivialName: PA14_54610
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54610
PAO1 Ortholog Locus:
Sequence Length:912
Protein Length:303
Start: 4841839
Stop: 4840928
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04137.1|AE004510_1 (AE004510) still frameshift probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 165/167 (98%), Positives = 165/167 (98%)
Sequence:
TTGGGATTCAGACTGCCGAGTCGCGTCGCCGTGAAGCGTTCCGTACAGACCTCCGCCTGGCCCCTGCCCAAC
CAGGGGGTGCGTTTCATCACGCCGCCCCGCCTGCGTCGCGCCCTGGCCCGCCATCCGCTCGGCCAGGCCTGC
TACCCACTGGCCCTCGGTTACTACCCGGAGGCGCATGGCCACCACATGCAGCGGCGCGCGCCGGACGACCAT
CTGTTGATCTACTGCCGTGCCGGACGCGGCTGGCTGGAGTGCGCCGACGAGCGCGTCGAGGTCGGCGGCGGC
GACCTGCTGGTCCTGCCCAAGGGCCTGGAACACGCCTACGGCGCCGACCCGCAGCGGCCCTGGAGCATCTAC
TGGGTACATTTCGAAGGCCTCCTGGCGGAGGACTTCCTGCGCCCGCTGGGCAGCGCTCCGCGCCTGCGCCTG
GGCATGCAGCCGCGCCTGCTGGCGGAGTTCGACGCGCTGCTGGCGCTGCGCCGCCAGGGCCTCAGCCTGCCG
CACTTCATCCATGCCGCGCACCTGTTGCAGGGCCTGCTCACCTCGCTGGCGGTGCGTCCGGCGCGGGCCAGC
CTGAAATCCGGGCGGGTGCTGGACATCGACGCGGTGCAGGCGCTGATGCGCGCGCACCTGCACGACAGCCTC
AACCTCGACGAGCTGGCGGCGCAGTTCAAGCTGTCGCGCTTCCATTTCGCCAAGACCTACCGCGCCCTGACC
GGCCAGGCGCCGATCCAGGACTTCATCCAGATGAAGATGGCCCACGCCTGCCGCCTGCTCGACGAGGGCGCG
CTGGAGGTACGGCAGATCGCCGAGCAGCTCGGCTACGCCGATCCCTATTACTTCTCGCGGCTGTTCCGCAAG
GTGGTGGGCATGGCGCCCAGTCACTACCGGGCGCTGCACCAGGGCTAG
Translation:
MGFRLPSRVAVKRSVQTSAWPLPNQGVRFITPPRLRRALARHPLGQACYPLALGYYPEAHGHHMQRRAPDDH
LLIYCRAGRGWLECADERVEVGGGDLLVLPKGLEHAYGADPQRPWSIYWVHFEGLLAEDFLRPLGSAPRLRL
GMQPRLLAEFDALLALRRQGLSLPHFIHAAHLLQGLLTSLAVRPARASLKSGRVLDIDAVQALMRAHLHDSL
NLDELAAQFKLSRFHFAKTYRALTGQAPIQDFIQMKMAHACRLLDEGALEVRQIAEQLGYADPYYFSRLFRK
VVGMAPSHYRALHQG*
AnnotationID:4341GeneID:4335
AnnotatorUID: danlee
Modification Date/Time: 2006-07-03 13:01:05
Gene Name:
Confidence Code:3
GeneProduct:still frameshift probable transcriptional regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
Insertion of "T" at nt 417 (aa 139 of predicted ORF) as compared to PAO1 confirmed
by manual inspection of raw sequence.  
Results in a frame-shift relative to PA0748 such that alignment occurs only in the C-terminus.


















    ReferenceID:15068




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25814




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4335
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6662
                           PA0748_tr
                           translation of PA0748
                           368
                           53.26
                           54.61
                           127
                           847.0
     

     
     
179098
                           gb|AAG04137.1|AE004510_1
                           (AE004510) still frameshift probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           368
                           53.26
                           54.61
                           127
                           847.0
     

     
     
6663
                           PA3571_tr
                           translation of PA3571
                           314
                           41.40
                           53.82
                           18
                           597.0
     

     
     
179099
                           gb|AAA25890.1|
                           (M84911) member of the AraC/XylS family of transcriptional regulators [Pseudomonas aeruginosa]
                           314
                           41.40
                           53.82
                           18
                           598.0
     

     
     
179100
                           gb|AAG06959.1|AE004778_3
                           (AE004778) transcriptional regulator MmsR [Pseudomonas aeruginosa PAO1]
                           314
                           41.40
                           53.82
                           18
                           597.0
     

     






      

          
GC ORFID: 47337How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0748Glimmer Score: 

          
Start: 112068Stop: 112979

          
Length: 912


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0748 translation of PA0748Homolog Bit Score 326.0

          
Other Homologs:  t_PA3571 (ORF: BLASTX 234.0), t_PA0748 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGGGATTCAGACTGCCGAGTCGCGTCGCCGTGAAGCGTTCCGTACAGACCTCCGCCTGGCCCCTGCCCAAC 
CAGGGGGTGCGTTTCATCACGCCGCCCCGCCTGCGTCGCGCCCTGGCCCGCCATCCGCTCGGCCAGGCCTGC 
TACCCACTGGCCCTCGGTTACTACCCGGAGGCGCATGGCCACCACATGCAGCGGCGCGCGCCGGACGACCAT 
CTGTTGATCTACTGCCGTGCCGGACGCGGCTGGCTGGAGTGCGCCGACGAGCGCGTCGAGGTCGGCGGCGGC 
GACCTGCTGGTCCTGCCCAAGGGCCTGGAACACGCCTACGGCGCCGACCCGCAGCGGCCCTGGAGCATCTAC 
TGGGTACATTTCGAAGGCCTCCTGGCGGAGGACTTCCTGCGCCCGCTGGGCAGCGCTCCGCGCCTGCGCCTG 
GGCATGCAGCCGCGCCTGCTGGCGGAGTTCGACGCGCTGCTGGCGCTGCGCCGCCAGGGCCTCAGCCTGCCG 
CACTTCATCCATGCCGCGCACCTGTTGCAGGGCCTGCTCACCTCGCTGGCGGTGCGTCCGGCGCGGGCCAGC 
CTGAAATCCGGGCGGGTGCTGGACATCGACGCGGTGCAGGCGCTGATGCGCGCGCACCTGCACGACAGCCTC 
AACCTCGACGAGCTGGCGGCGCAGTTCAAGCTGTCGCGCTTCCATTTCGCCAAGACCTACCGCGCCCTGACC 
GGCCAGGCGCCGATCCAGGACTTCATCCAGATGAAGATGGCCCACGCCTGCCGCCTGCTCGACGAGGGCGCG 
CTGGAGGTACGGCAGATCGCCGAGCAGCTCGGCTACGCCGATCCCTATTACTTCTCGCGGCTGTTCCGCAAG 
GTGGTGGGCATGGCGCCCAGTCACTACCGGGCGCTGCACCAGGGCTAG