ViewGene

Locus Name:
GeneID:
Location:

GeneID:4333
TrivialName: PA14_07290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07290
PAO1 Ortholog Locus:PA0560
Sequence Length:489
Protein Length:162
Start: 627637
Stop: 628125
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03949.1|AE004492_8 (AE004492) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 162/162 (100%), Positives = 162/162 (100%)
Sequence:
ATGATCCCCCTCAAGTATCTCCAGGCCTATCCCGCATCGCTGCAGGACCAGGTCCGCCAGCTGATCGCCGAG
AACCGCCTGGGCGAGTACCTCGAGCGCCGCTACCCGGGGCGTCACGATGTGCAGAGTGACAAGGCGCTGTAC
GCCTACACCATGAACCTCAAGCAGGAACACCTGCGCAACGCGCCGGGCCTGGACAAGGTGCTCTACGACAAC
AAGCTCGACGTGGTCCAGCGTGCCCTCGGCCTGCACACCGCGATCTCGCGGGTGCAGGGCGGCAAGCTCAAG
GCGAAGAAGGAAATCCGCGTGGCTTCCCTGTTCAAGGACGCCGCCCCGGAGTTCCTGCGGATGATCGTCGTC
CACGAACTCGCCCACCTGAAGGAAAGCGAGCACAACAAGGCGTTCTACCAGCTCTGCCAGTACATGCTGCCG
GACTATCACCAGCTGGAGTTCGACTTGCGGGTGTACCTGACCTGGAAGAGTCTCTAG
Translation:
MIPLKYLQAYPASLQDQVRQLIAENRLGEYLERRYPGRHDVQSDKALYAYTMNLKQEHLRNAPGLDKVLYDN
KLDVVQRALGLHTAISRVQGGKLKAKKEIRVASLFKDAAPEFLRMIVVHELAHLKESEHNKAFYQLCQYMLP
DYHQLEFDLRVYLTWKSL*
AnnotationID:4339GeneID:4333
AnnotatorUID: diggins
Modification Date/Time: 2004-08-17 18:06:09
Gene Name:
Confidence Code:3
GeneProduct:putative metal-dependent hydrolase
Cell Localization:()
Synonyms:ygjP
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAL22094.1| (AE008848) putative metal-dependent hydrolase [Salmonella
           typhimurium LT2]
          Length = 165

 Score =  219 bits (559), Expect = 4e-57
 Identities = 108/162 (66%), Positives = 129/162 (79%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:8667
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25810
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33860
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4333_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4333

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6660 PA0560_tr translation of PA0560 162 99.99 99.99 0 839.0
179073 gb|AAG03949.1|AE004492_8 (AE004492) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 162 99.99 99.99 0 839.0
179074 gb|AAN70525.1|AE016694_8 (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440] 179 68.15 81.00 17 655.0
179075 gb|AAO58441.1| (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 174 67.81 79.88 12 638.0
179076 gb|AAL22094.1| (AE008848) putative metal-dependent hydrolase [Salmonella typhimurium LT2] 165 65.45 78.18 3 559.0
GC ORFID: 47335How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0560Glimmer Score:
Start: 6428979Stop: 6429467
Length: 489
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0560 translation of PA0560Homolog Bit Score 327.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3370 (ORF: BLASTX 260.0), t_PA0560 (ORF: GLIMMER)
GC ORF Sequence
ATGATCCCCCTCAAGTATCTCCAGGCCTATCCCGCATCGCTGCAGGACCAGGTCCGCCAGCTGATCGCCGAG
AACCGCCTGGGCGAGTACCTCGAGCGCCGCTACCCGGGGCGTCACGATGTGCAGAGTGACAAGGCGCTGTAC
GCCTACACCATGAACCTCAAGCAGGAACACCTGCGCAACGCGCCGGGCCTGGACAAGGTGCTCTACGACAAC
AAGCTCGACGTGGTCCAGCGTGCCCTCGGCCTGCACACCGCGATCTCGCGGGTGCAGGGCGGCAAGCTCAAG
GCGAAGAAGGAAATCCGCGTGGCTTCCCTGTTCAAGGACGCCGCCCCGGAGTTCCTGCGGATGATCGTCGTC
CACGAACTCGCCCACCTGAAGGAAAGCGAGCACAACAAGGCGTTCTACCAGCTCTGCCAGTACATGCTGCCG
GACTATCACCAGCTGGAGTTCGACTTGCGGGTGTACCTGACCTGGAAGAGTCTCTAG