ViewGene

Locus Name:
GeneID:
Location:

GeneID:4332
TrivialName: PA14_10560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10560
PAO1 Ortholog Locus:PA4129
Sequence Length:489
Protein Length:162
Start: 910318
Stop: 910806
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07516.1|AE004829_6 (AE004829) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 160/162 (98%), Positives = 160/162 (98%)
Sequence:
ATGAACAACCTGATCCGTTTGCGCGATGGCGTCGCCGAGGTCTGCCGCGACGATCCCTGGCAACTCCTGCGC
GAGTTGCCCGACGCGTTGCCGCCGGGGCCGTTGCTGCTGCCTCTGGCGGCCTGGCTGGAGCACCGCGGCGAG
GCCGGGGCCGCCGCGCCCTGGCTGGCGCCGGACGATGAGGTGGAGGCCTTGCTGCCGCACTTCGCCGAGCTG
CCGCTGATCGCCGTCGACTTCCCCAGCTTCCGCGACGGTCGTGGCTACAGCCTGGCCTACCTGCTGCGCGTG
CGCCTGGGCTGGAGCGGCGAGTTGCGCGCAGTGGGCGACGTGTTGCGCGACCAGCTCAGCCATATGCGCCAG
TGCGGCTTCGATGCCTTCGCGGTGCGCGAGGACAAGAACGTCGTGGACGCGCTCAAGGGGCTGGCGGGTTTG
AGCGTGCTCTACGGACGCTCGGCGATTGAGCCGCGACCGTTGTTCCGCCGACGCTAG
Translation:
MNNLIRLRDGVAEVCRDDPWQLLRELPDALPPGPLLLPLAAWLEHRGEAGAAAPWLAPDDEVEALLPHFAEL
PLIAVDFPSFRDGRGYSLAYLLRVRLGWSGELRAVGDVLRDQLSHMRQCGFDAFAVREDKNVVDALKGLAGL
SVLYGRSAIEPRPLFRRR*
AnnotationID:4338GeneID:4332
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 13:01:50
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4129
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:8665
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25808
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36811
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4332_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4332

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6658 PA4129_tr translation of PA4129 162 98.76 98.76 0 837.0
179067 gb|AAG07516.1|AE004829_6 (AE004829) hypothetical protein PA4129 [Pseudomonas aeruginosa PAO1] 162 98.76 98.76 0 837.0
179068 emb|CAD16131.1| (AL646070) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] 199 47.23 57.78 42 436.0
179070 gb|AAO56230.1| (AE016865) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 169 45.56 59.76 12 348.0
6659 PA1837_tr translation of PA1837 173 45.08 59.53 19 358.0
GC ORFID: 47334How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4129Glimmer Score:
Start: 4043619Stop: 4043131
Length: 489
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4129 translation of PA4129Homolog Bit Score 327.0
Other Homologs: t_PA1837 (ORF: BLASTX 138.0), psyr_15may02_Scaffold1_revised_gene112 (ORF: BLASTX 132.0), t_PA4129 (ORF: GLIMMER)
GC ORF Sequence
ATGAACAACCTGATCCGTTTGCGCGATGGCGTCGCCGAGGTCTGCCGCGACGATCCCTGGCAACTCCTGCGC
GAGTTGCCCGACGCGTTGCCGCCGGGGCCGTTGCTGCTGCCTCTGGCGGCCTGGCTGGAGCACCGCGGCGAG
GCCGGGGCCGCCGCGCCCTGGCTGGCGCCGGACGATGAGGTGGAGGCCTTGCTGCCGCACTTCGCCGAGCTG
CCGCTGATCGCCGTCGACTTCCCCAGCTTCCGCGACGGTCGTGGCTACAGCCTGGCCTACCTGCTGCGCGTG
CGCCTGGGCTGGAGCGGCGAGTTGCGCGCAGTGGGCGACGTGTTGCGCGACCAGCTCAGCCATATGCGCCAG
TGCGGCTTCGATGCCTTCGCGGTGCGCGAGGACAAGAACGTCGTGGACGCGCTCAAGGGGCTGGCGGGTTTG
AGCGTGCTCTACGGACGCTCGGCGATTGAGCCGCGACCGTTGTTCCGCCGACGCTAG