ViewGene
Locus Name:
GeneID:
Location:

GeneID:4331
TrivialName: PA14_21860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21860
PAO1 Ortholog Locus:PA3259
Sequence Length:480
Protein Length:159
Start: 1899826
Stop: 1900305
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06647.1|AE004748_5 (AE004748) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 158/159 (99%), Positives = 159/159 (100%)
Sequence:
ATGAACTCTGAATGGATCTGGCGCCTGCGCGCCCGCCTCGGTTACGGCGTGGCCCGGCAGTTGCTGGGCTGG
CCCTGGCTGGTCAAGCAGCCGCGAGCCTGGCAGTGGATGCAGGGGCAGTTCTCGCGCATGGCCAACCTCGGA
CACCGCGACGCCCAGGCGTTCTACGGTCACCTGCTGCTGTTCCGTGGACAGGGCTTCGGCGCACGCGAGGAG
GGCCTGCGCCTGCTGCGCCTGGCTGCCAGCGCGGGCGATGGGAAAGCGGCCTACCAGCTCGGCGTGCAGGCG
CTCAAGGGCGACAGCCGGCAAGCGCCCGACGCGCTGGCAGCCAGCCGCCACTGGGCACTAGCGGCAGAGGCG
GGCCACCCGCTGGCGGCGCGCAAGCTGGCGGAACTCTACCGCGATGGAGGCCCGGGCCTGGCGCCGGACAGC
GAGCGCGCCGAGCACTATGCGCAACGGGCGTCCGCGCTCGGTCTCTAG
Translation:
MNSEWIWRLRARLGYGVARQLLGWPWLVKQPRAWQWMQGQFSRMANLGHRDAQAFYGHLLLFRGQGFGAREE
GLRLLRLAASAGDGKAAYQLGVQALKGDSRQAPDALAASRHWALAAEAGHPLAARKLAELYRDGGPGLAPDS
ERAEHYAQRASALGL*
AnnotationID:4337GeneID:4331
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 17:05:03
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3259
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8663




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25806




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4331
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6657
                           PA3259_tr
                           translation of PA3259
                           159
                           99.37
                           99.99
                           0
                           839.0
     

     
     
179066
                           gb|AAG06647.1|AE004748_5
                           (AE004748) hypothetical protein PA3259 [Pseudomonas aeruginosa PAO1]
                           159
                           99.37
                           99.99
                           0
                           839.0
     

     






      

          
GC ORFID: 47333How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3259Glimmer Score: 

          
Start: 3054105Stop: 3053626

          
Length: 480


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3259 translation of PA3259Homolog Bit Score 327.0

          
Other Homologs:  t_PA3259 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACTCTGAATGGATCTGGCGCCTGCGCGCCCGCCTCGGTTACGGCGTGGCCCGGCAGTTGCTGGGCTGG 
CCCTGGCTGGTCAAGCAGCCGCGAGCCTGGCAGTGGATGCAGGGGCAGTTCTCGCGCATGGCCAACCTCGGA 
CACCGCGACGCCCAGGCGTTCTACGGTCACCTGCTGCTGTTCCGTGGACAGGGCTTCGGCGCACGCGAGGAG 
GGCCTGCGCCTGCTGCGCCTGGCTGCCAGCGCGGGCGATGGGAAAGCGGCCTACCAGCTCGGCGTGCAGGCG 
CTCAAGGGCGACAGCCGGCAAGCGCCCGACGCGCTGGCAGCCAGCCGCCACTGGGCACTAGCGGCAGAGGCG 
GGCCACCCGCTGGCGGCGCGCAAGCTGGCGGAACTCTACCGCGATGGAGGCCCGGGCCTGGCGCCGGACAGC 
GAGCGCGCCGAGCACTATGCGCAACGGGCGTCCGCGCTCGGTCTCTAG