ViewGene
Locus Name:
GeneID:
Location:

GeneID:4330
TrivialName: PA14_24590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24590
PAO1 Ortholog Locus:PA3055
Sequence Length:477
Protein Length:158
Start: 2148574
Stop: 2149050
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06443.1|AE004730_7 (AE004730) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/158 (99%), Positives = 158/158 (100%)
Sequence:
ATGGTCTATGTAGTGAGGAAGCGCTGCCTGTTTCGCGCCGGCGAGCGCCTGTTCGGGTTGCGCGGGCTGACG
GGGTTGAACCGACCGCAGTTTTCCGAGGTGGTCGGCATGGATCCCAAACGCCTTGAGAACATCGAGAGTGGC
CGGCAGCGCATGCACGACGAGGATTTCGAGAAGGTCTGCGGGACCTTTCCGGAGTTCAGCGACTGGATCGCC
TATGAAGGCAGCATCGAACCGCAGTCGATCGCCTGGAAGATCGCCGAGGCCGCCCAGGAAGCGGCGGTCTAT
CTGGTGGAGCGCAACCCCGAGCTGCTCGAACTCCACGGCCTCGACGTGCCGGCCTGGCGCGAGAAGCATCGG
GAAATCCTCAAGAAGCTGCGCAAGCGGGAACTGTCGCCGCCACCCGAAAAACCACCGAAACCCAGGCGCAAG
CGCAAGCCGAGAAGCAACCTGCCCACACCCACCGACGGTACCTGA
Translation:
MVYVVRKRCLFRAGERLFGLRGLTGLNRPQFSEVVGMDPKRLENIESGRQRMHDEDFEKVCGTFPEFSDWIA
YEGSIEPQSIAWKIAEAAQEAAVYLVERNPELLELHGLDVPAWREKHREILKKLRKRELSPPPEKPPKPRRK
RKPRSNLPTPTDGT*
AnnotationID:4336GeneID:4330
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 09:09:56
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3055
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8661




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25804




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32448




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4330_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4330
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6655
                           PA3055_tr
                           translation of PA3055
                           158
                           99.36
                           99.99
                           0
                           838.0
     

     
     
179064
                           gb|AAG06443.1|AE004730_7
                           (AE004730) hypothetical protein PA3055 [Pseudomonas aeruginosa PAO1]
                           158
                           99.36
                           99.99
                           0
                           838.0
     

     
     
6656
                           PA3056_tr
                           translation of PA3056
                           165
                           64.24
                           75.75
                           14
                           537.0
     

     
     
179065
                           gb|AAG06444.1|AE004730_8
                           (AE004730) hypothetical protein PA3056 [Pseudomonas aeruginosa PAO1]
                           165
                           64.24
                           75.75
                           14
                           537.0
     

     






      

          
GC ORFID: 47332How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3055Glimmer Score: 

          
Start: 2805355Stop: 2804879

          
Length: 477


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3055 translation of PA3055Homolog Bit Score 327.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGTCTATGTAGTGAGGAAGCGCTGCCTGTTTCGCGCCGGCGAGCGCCTGTTCGGGTTGCGCGGGCTGACG 
GGGTTGAACCGACCGCAGTTTTCCGAGGTGGTCGGCATGGATCCCAAACGCCTTGAGAACATCGAGAGTGGC 
CGGCAGCGCATGCACGACGAGGATTTCGAGAAGGTCTGCGGGACCTTTCCGGAGTTCAGCGACTGGATCGCC 
TATGAAGGCAGCATCGAACCGCAGTCGATCGCCTGGAAGATCGCCGAGGCCGCCCAGGAAGCGGCGGTCTAT 
CTGGTGGAGCGCAACCCCGAGCTGCTCGAACTCCACGGCCTCGACGTGCCGGCCTGGCGCGAGAAGCATCGG 
GAAATCCTCAAGAAGCTGCGCAAGCGGGAACTGTCGCCGCCACCCGAAAAACCACCGAAACCCAGGCGCAAG 
CGCAAGCCGAGAAGCAACCTGCCCACACCCACCGACGGTACCTGA