ViewGene
Locus Name:
GeneID:
Location:

GeneID:4329
TrivialName: PA14_28960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28960
PAO1 Ortholog Locus:PA2721
Sequence Length:480
Protein Length:159
Start: 2504678
Stop: 2504199
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06109.1|AE004700_5 (AE004700) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 158/159 (99%), Positives = 158/159 (99%)
Sequence:
ATGATCAGCAAGAACACCATCTGCCTCTGGTACGACAGTGCCGCCCTGGAGGCCGCGACCTTCTACGCCGAG
ACATTTCCTGACAGCGCCGTGCTGGCTGTCCATCGTGCGCCCGGCGACTACCCTTCCGGCAAGGAGGGTGAC
GTGCTGACGGTGGAGTTCCGGGTGATGGGCATTCCCTGCCTCGGCCTCAACGGCGGCCCGGCCTTCCGCCAC
AGCGAAGCGTTCTCCTTCCAGGTCGCCACCGACGACCAGGCCGAGACCGACCGCCTGTGGAACGCCATCGTC
GACAATGGCGGCGAGGAAAGCGCCTGCGGCTGGTGCCGCGACAAATGGGGCATCTCCTGGCAGATCACCCCG
CGCGTTCTCAGCGAAGCCATCGCCAGCCCCGACCGCGCGGCGGCCAGGCGCGCCTTCGAGGCGATGATGACG
ATGGGCAGGATCGATATCGCCACCATAGAGAAGGCCTTCAAGGGCTGA
Translation:
MISKNTICLWYDSAALEAATFYAETFPDSAVLAVHRAPGDYPSGKEGDVLTVEFRVMGIPCLGLNGGPAFRH
SEAFSFQVATDDQAETDRLWNAIVDNGGEESACGWCRDKWGISWQITPRVLSEAIASPDRAAARRAFEAMMT
MGRIDIATIEKAFKG*
AnnotationID:4335GeneID:4329
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 07:07:09
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2721
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8659




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25802




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36264




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4329_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4329
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6654
                           PA2721_tr
                           translation of PA2721
                           159
                           99.37
                           99.37
                           0
                           837.0
     

     
     
179044
                           gb|AAG06109.1|AE004700_5
                           (AE004700) hypothetical protein PA2721 [Pseudomonas aeruginosa PAO1]
                           159
                           99.37
                           99.37
                           0
                           837.0
     

     
     
179045
                           emb|CAD44481.1|
                           (AJ297529) hypoothetical protein [Pseudomonas stutzeri]
                           159
                           82.38
                           89.30
                           0
                           710.0
     

     
     
179047
                           gb|AAN69229.1|AE016557_9
                           (AE016787) conserved hypothetical protein [Pseudomonas putida KT2440]
                           159
                           76.72
                           85.53
                           0
                           671.0
     

     
     
179046
                           emb|CAD17748.1|
                           (AL646079) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           165
                           75.75
                           83.63
                           6
                           680.0
     

     






      

          
GC ORFID: 47331How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2721Glimmer Score: 

          
Start: 2449248Stop: 2449727

          
Length: 480


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2721 translation of PA2721Homolog Bit Score 327.0

          
Other Homologs:  t_PA2721 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCAGCAAGAACACCATCTGCCTCTGGTACGACAGTGCCGCCCTGGAGGCCGCGACCTTCTACGCCGAG 
ACATTTCCTGACAGCGCCGTGCTGGCTGTCCATCGTGCGCCCGGCGACTACCCTTCCGGCAAGGAGGGTGAC 
GTGCTGACGGTGGAGTTCCGGGTGATGGGCATTCCCTGCCTCGGCCTCAACGGCGGCCCGGCCTTCCGCCAC 
AGCGAAGCGTTCTCCTTCCAGGTCGCCACCGACGACCAGGCCGAGACCGACCGCCTGTGGAACGCCATCGTC 
GACAATGGCGGCGAGGAAAGCGCCTGCGGCTGGTGCCGCGACAAATGGGGCATCTCCTGGCAGATCACCCCG 
CGCGTTCTCAGCGAAGCCATCGCCAGCCCCGACCGCGCGGCGGCCAGGCGCGCCTTCGAGGCGATGATGACG 
ATGGGCAGGATCGATATCGCCACCATAGAGAAGGCCTTCAAGGGCTGA