ViewGene
Locus Name:
GeneID:
Location:

GeneID:4328
TrivialName: PA14_37550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37550
PAO1 Ortholog Locus:PA2085
Sequence Length:510
Protein Length:169
Start: 3341373
Stop: 3340864
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05473.1|AE004636_4 (AE004636) probable ring-hydroxylating dioxygenase small subunit [Pseudomonas aeruginosa PAO1]
Identities = 167/169 (98%), Positives = 168/169 (99%)
Sequence:
ATGAGCCTTGCCTTGTCCCGTCCCGACAGCGACCTGCTGGCGCGGGTCAGCGATTTCCTCGTCGCCGAAGCC
GAGCTGCTCGACGACCGCCTGCTGGATACCTGGTTCGCCCTGTTCGAGCGCGCTGCACGCTACCGGGTGCTG
CCGTTGCAGGAGCAACTGGCCGGCCAGGCGCCGGAGGACAGCCTGTACATCATCGACGACGATCACGTGCGT
CTGCGCGAGCGGGTCGACAGCATCCTCGGCGGGCATACCTGGATGGAGCAGCCGCGCTCGCGCACCCGCCGC
CTGGTGGGCAACGTGCGGCTGAAGCGGGTCGAGGGCGAACTGGTCAGCAGCCGCAGCAACTTCGTCGTCCAT
CAGTTCCGCAACCGCGAGGCCTGGAACTTCGTCGGCGAAGCCAGCCATGTCCTGCGCGACGGTCCCGAGGGC
TTGCGCATCGTCTCGCGGGAGATCCGCCTGGACCACGAGACCATCAGCGCCCAGCGGCGCATCAGCATCATC
CTGTGA
Translation:
MSLALSRPDSDLLARVSDFLVAEAELLDDRLLDTWFALFERAARYRVLPLQEQLAGQAPEDSLYIIDDDHVR
LRERVDSILGGHTWMEQPRSRTRRLVGNVRLKRVEGELVSSRSNFVVHQFRNREAWNFVGEASHVLRDGPEG
LRIVSREIRLDHETISAQRRISIIL*
AnnotationID:4334GeneID:4328
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 07:07:41
Gene Name:
Confidence Code:3
GeneProduct:putative ring-hydroxylating dioxygenase small subunit
Cell Localization:()
Synonyms:PA2085
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:putative small subunit of phenylpropionate dioxygenase
Functional Category Confidence Code:5
COGs:COG5517,cd00667,pfam00866
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAB62286.1| (U24215) p-cumate dioxygenase small subunit [Pseudomonas putida]
          Length = 180

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 61/156 (39%), Positives = 80/156 (51%), Gaps = 1/156 (0%)






 
Structural Features:
COG5517, COG5517, Small subunit of phenylpropionate dioxygenase 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 164 residues, 100.0% aligned
Score =  179 bits (455), Expect = 2e-46
Identities = 63/164 (38%), Positives = 88/164 (53%), Gaps = 2/164 (1%)

cd00667, ring_hydroxylating_dioxygenases_beta, Ring hydroxylating dioxygenase beta subunit.
CD-Length = 160 residues,  95.0% aligned
Score =  119 bits (301), Expect = 1e-28
Identities = 63/152 (41%), Positives = 77/152 (50%), Gaps = 3/152 (1%)

pfam00866, Ring_hydroxyl_B, Ring hydroxylating beta subunit.
CD-Length = 145 residues, 100.0% aligned
Score =  109 bits (275), Expect = 1e-25
Identities = 51/145 (35%), Positives = 70/145 (48%), Gaps = 4/145 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8657




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25800




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32621




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4328_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4328
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6653
                           PA2085_tr
                           translation of PA2085
                           169
                           98.81
                           99.40
                           0
                           839.0
     

     
     
179043
                           gb|AAG05473.1|AE004636_4
                           (AE004636) probable ring-hydroxylating dioxygenase small subunit [Pseudomonas aeruginosa PAO1]
                           169
                           98.81
                           99.40
                           0
                           839.0
     

     






      

          
GC ORFID: 47330How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2085Glimmer Score: 

          
Start: 1612541Stop: 1613050

          
Length: 510


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2085 translation of PA2085Homolog Bit Score 327.0

          
Other Homologs:  t_PA2085 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTTGCCTTGTCCCGTCCCGACAGCGACCTGCTGGCGCGGGTCAGCGATTTCCTCGTCGCCGAAGCC 
GAGCTGCTCGACGACCGCCTGCTGGATACCTGGTTCGCCCTGTTCGAGCGCGCTGCACGCTACCGGGTGCTG 
CCGTTGCAGGAGCAACTGGCCGGCCAGGCGCCGGAGGACAGCCTGTACATCATCGACGACGATCACGTGCGT 
CTGCGCGAGCGGGTCGACAGCATCCTCGGCGGGCATACCTGGATGGAGCAGCCGCGCTCGCGCACCCGCCGC 
CTGGTGGGCAACGTGCGGCTGAAGCGGGTCGAGGGCGAACTGGTCAGCAGCCGCAGCAACTTCGTCGTCCAT 
CAGTTCCGCAACCGCGAGGCCTGGAACTTCGTCGGCGAAGCCAGCCATGTCCTGCGCGACGGTCCCGAGGGC 
TTGCGCATCGTCTCGCGGGAGATCCGCCTGGACCACGAGACCATCAGCGCCCAGCGGCGCATCAGCATCATC 
CTGTGA