ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4327

TrivialName: PA14_37990

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_37990

PAO1 Ortholog Locus: PA2050

Sequence Length: 507

Protein Length: 168

Start: 3389707

Stop: 3389201

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05438.1|AE004631_7 (AE004631) probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa PAO1] Identities = 166/168 (98%), Positives = 167/168 (99%)

Sequence:

ATGGGCATGGATCAGACACGCAATCGCCTCGTCGGCCTGATGTTCCAGAACGACTATTCCTGGCTGAGCGGG
CGCCTGCGGCGCTACCTCGGCTGCCCCCACAGCGCCGAGGACATCGCCTCGGAAACCTTCCTCAAGGTCCTC
GCCCTGCCGGACCCGGCAAGCATCCGCGAGCCGCGCGCGCTGCTCACCACCATCGCCCGCCGGTTGATGTAC
GACGGCTGGCGGCGCCAGGACCTGGAACGCGCCTACCTGGACAGCCTGGCCGGGCTTCCGGAGGCCCTCGCG
CCGTCCGCCGAGGAGCAGGCCCAGGTGGTGGAAACCCTGCTGCGCCTGGAGCGCATGCTCGCCGGGCTGTCG
CCGAAGGCCCGCGCCGCCTTCATCCATAGCCAGATCGGCGGACTGACCTACGTGGAGATCGCCGGCTTGCTG
GAGGTTTCCGTCAGCCGCATCCACCAGTACATGGTCGAGGGCTTCAAGCAGTGCTACCAGGTGCTTGCCGAA
TGA

Translation:

MGMDQTRNRLVGLMFQNDYSWLSGRLRRYLGCPHSAEDIASETFLKVLALPDPASIREPRALLTTIARRLMY
DGWRRQDLERAYLDSLAGLPEALAPSAEEQAQVVETLLRLERMLAGLSPKARAAFIHSQIGGLTYVEIAGLL
EVSVSRIHQYMVEGFKQCYQVLAE*

AnnotationID:4333 GeneID:4327

AnnotatorUID: diggins

Modification Date/Time: 2005-03-03 05:05:29

Gene Name:

Confidence Code: 3

GeneProduct: putative sigma-70 factor, ECF subfamily

Cell Localization: ()

Synonyms: PA2050

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG1595

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>emb|CAC44790.1| (AJ313519) regulatory protein [Ralstonia solanacearum]
          Length = 169

 Score =  162 bits (409), Expect = 1e-39
 Identities = 81/149 (54%), Positives = 104/149 (69%)

>gb|AAO54736.1| (AE016860) RNA polymerase sigma-70 family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 168

 Score =  145 bits (367), Expect = 7e-35
 Identities = 74/159 (46%), Positives = 110/159 (69%)

>emb|CAD84990.1| (BX321859) Sigma factor, ECF subfamily [Nitrosomonas europaea ATCC
           19718]
          Length = 172

 Score =  127 bits (318), Expect = 4e-29
 Identities = 64/150 (42%), Positives = 96/150 (64%)

Structural Features:

COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, 
sigma24 homolog 
[Transcription]
CD-Length = 182 residues,  92.9% aligned
Score =  101 bits (253), Expect = 4e-23
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 3/169 (1%)

Genomic Context:

Comment:

ReferenceID:8655

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25798

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32654

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 4327_cdd.html

URL:

Homologs By Global Alignment

Gene ID:4327

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6647 PA2050_tr translation of PA2050 168 98.80 99.40 0 838.0

179005 gb|AAG05438.1|AE004631_7 (AE004631) probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa PAO1] 168 98.80 99.40 0 838.0

6648 PA2093_tr translation of PA2093 171 52.04 67.25 5 442.0

179006 gb|AAG05481.1|AE004637_1 (AE004637) probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa PAO1] 171 52.04 67.25 5 442.0

179008 emb|CAD18000.1| (AL646081) 3-COMPARTIMENT SIGNAL TRANSDUCTION SYSTEM, SIGMA FACTOR PRHI TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] 173 49.13 63.00 9 398.0

GC ORFID: `47329`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2050`	Glimmer Score:
Start: `1564203`	Stop: `1564709`
Length: `507`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2050 translation of PA2050`	Homolog Bit Score `327.0`
Other Homologs: `t_PA2093 (ORF: BLASTX 175.0), t_PA3899 (ORF: BLASTX 152.0), psyr_15may02_Scaffold6_revised_gene6627 (ORF: BLASTX 148.0), t_PA0472 (ORF: BLASTX 146.0), psyr_15may02_Scaffold3_revised_gene5013 (ORF: BLASTX 143.0), t_PA1912 (ORF: BLASTX 140.0), t_PA2468 (ORF: BLASTX 128.0), psyr_15may02_Scaffold1_revised_gene1362 (ORF: BLASTX 115.0), t_PA2050 (ORF: GLIMMER)`
GC ORF Sequence
ATGGGCATGGATCAGACACGCAATCGCCTCGTCGGCCTGATGTTCCAGAACGACTATTCCTGGCTGAGCGGG CGCCTGCGGCGCTACCTCGGCTGCCCCCACAGCGCCGAGGACATCGCCTCGGAAACCTTCCTCAAGGTCCTC GCCCTGCCGGACCCGGCAAGCATCCGCGAGCCGCGCGCGCTGCTCACCACCATCGCCCGCCGGTTGATGTAC GACGGCTGGCGGCGCCAGGACCTGGAACGCGCCTACCTGGACAGCCTGGCCGGGCTTCCGGAGGCCCTCGCG CCGTCCGCCGAGGAGCAGGCCCAGGTGGTGGAAACCCTGCTGCGCCTGGAGCGCATGCTCGCCGGGCTGTCG CCGAAGGCCCGCGCCGCCTTCATCCATAGCCAGATCGGCGGACTGACCTACGTGGAGATCGCCGGCTTGCTG GAGGTTTCCGTCAGCCGCATCCACCAGTACATGGTCGAGGGCTTCAAGCAGTGCTACCAGGTGCTTGCCGAA TGA