ViewGene

Locus Name:
GeneID:
Location:

GeneID:4326
TrivialName: PA14_42940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42940
PAO1 Ortholog Locus:PA1666
Sequence Length:507
Protein Length:168
Start: 3818463
Stop: 3817957
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05055.1|AE004594_7 (AE004594) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 167/168 (99%), Positives = 168/168 (100%)
Sequence:
ATGTCTCGTCGCCCGATTCCGCCAGCCAGGGCGCTGGCCATGCTCGCCGTCCTGGCGCTGCTGGCCGGCTGT
TCCACGCTGTCGCCGTATTCCAGACTGACCAAGCTCGACCTCGCCCTGAGCGCCGGCGAGCGGGTCAATCCC
GACCTCAATGGCCGGCCGTCGCCGGTGGTAGTGCGGCTGTTCGAGCTGAAGCACCCGGTGGCGTTCGAGAAC
GCCGACTTCTTCAGCCTCTACGAACGTCCCAAGGAGACCCTGGACCCCGACCTGGTGACCAGCGAGGAGCTG
GAGCTGCGGCCCGGCGAGCGGGTCGAACTCAAACTCAGCGTGGAGGAGGGGAGCCGCTACGTGGGCGTGCTC
GCCGCCTACCGCGATCTCGGCGAGGCAAGCTGGCGCTACGTGGTGCCGGTCACGGCGAAAGAGCTGACCCGG
GTAGAGCTGAAGCTGGGCCGGAAGGGCATCCTGAATGCCGGCGAACTGCTCGGCAAGGCGGGTGACGCGCGA
TGA
Translation:
MSRRPIPPARALAMLAVLALLAGCSTLSPYSRLTKLDLALSAGERVNPDLNGRPSPVVVRLFELKHPVAFEN
ADFFSLYERPKETLDPDLVTSEELELRPGERVELKLSVEEGSRYVGVLAAYRDLGEASWRYVVPVTAKELTR
VELKLGRKGILNAGELLGKAGDAR*
AnnotationID:4332GeneID:4326
AnnotatorUID: diggins
Modification Date/Time: 2005-06-01 15:03:53
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA1666
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58843.1| (AE016875) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 166

 Score =  220 bits (560), Expect = 3e-57
 Identities = 114/166 (68%), Positives = 130/166 (78%)

>emb|CAE40136.1| (BX640425) putative lipoprotein [Bordetella parapertussis]
          Length = 180

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 1/136 (0%)

>gb|AAL19237.1| (AE008707) putative outer membrane lipoprotein [Salmonella
           typhimurium LT2]
          Length = 178

 Score = 95.5 bits (236), Expect = 1e-19
 Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 4/138 (2%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:8653
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25796
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37166
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4326_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4326

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6646 PA1666_tr translation of PA1666 168 99.40 99.99 0 837.0
178999 gb|AAG05055.1|AE004594_7 (AE004594) hypothetical protein PA1666 [Pseudomonas aeruginosa PAO1] 168 99.40 99.99 0 837.0
179000 gb|AAO58843.1| (AE016875) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000] 168 67.85 77.38 2 560.0
179001 gb|AAO56056.1| (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 174 48.85 62.06 17 417.0
179002 gb|AAO07398.1|AE016809_160 (AE016809) Uncharacterized protein conserved in bacteria [Vibrio vulnificus CMCP6] 180 36.11 50.00 41 288.0
GC ORFID: 47328How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1666Glimmer Score:
Start: 1135446Stop: 1135952
Length: 507
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1666 translation of PA1666Homolog Bit Score 327.0
Other Homologs: t_PA1666 (ORF: GLIMMER)
GC ORF Sequence
ATGTCTCGTCGCCCGATTCCGCCAGCCAGGGCGCTGGCCATGCTCGCCGTCCTGGCGCTGCTGGCCGGCTGT
TCCACGCTGTCGCCGTATTCCAGACTGACCAAGCTCGACCTCGCCCTGAGCGCCGGCGAGCGGGTCAATCCC
GACCTCAATGGCCGGCCGTCGCCGGTGGTAGTGCGGCTGTTCGAGCTGAAGCACCCGGTGGCGTTCGAGAAC
GCCGACTTCTTCAGCCTCTACGAACGTCCCAAGGAGACCCTGGACCCCGACCTGGTGACCAGCGAGGAGCTG
GAGCTGCGGCCCGGCGAGCGGGTCGAACTCAAACTCAGCGTGGAGGAGGGGAGCCGCTACGTGGGCGTGCTC
GCCGCCTACCGCGATCTCGGCGAGGCAAGCTGGCGCTACGTGGTGCCGGTCACGGCGAAAGAGCTGACCCGG
GTAGAGCTGAAGCTGGGCCGGAAGGGCATCCTGAATGCCGGCGAACTGCTCGGCAAGGCGGGTGACGCGCGA
TGA