ViewGene
Locus Name:
GeneID:
Location:

GeneID:4325
TrivialName: PA14_47530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47530
PAO1 Ortholog Locus:PA1289
Sequence Length:480
Protein Length:159
Start: 4233411
Stop: 4233890
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04678.1|AE004558_7 (AE004558) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 159/159 (100%), Positives = 159/159 (100%)
Sequence:
ATGGGTATTTCCGCCAACGATCTTTGCCAGCACGTGATACGCCCGACCCTGGACTACCTGTCCTGCCACAGC
CCCGCCGCCGAAGCGCTGCTGCTGGGCGCGGCGGCCTGCCAGTCGGCGCTCGGGAGCGCCCTCGACGACCGC
CGTGGCCACGGCCTGTACCGGATCGCCAGCGAACGCCACCAGCAGCTCTGGGACCAGTACCTGGCGCTGGAC
CCGGAGCGCGCCAGCCGGGTCCGCGGCCTGGCCAGCCAGCATGCCTTCCTTGCCGCGCCGCACCTGGAACTG
ACGGTGAACCTGCGCTACAGCACGGCCATCGCCTGGTCGCTGGTGGAAGCCGCGCGACTGCCGCTGCCCGAC
CAGCACGATCACCTCGCCCAGGCTCGCGTGTGGCGCCAGGTATTCCAGCCGCACGGTCGCCTGCACGAGTTC
ATCGACGCCTGGCAACGCTGCATCGGCAGCCTCAGCCAGGTCGCCTGA
Translation:
MGISANDLCQHVIRPTLDYLSCHSPAAEALLLGAAACQSALGSALDDRRGHGLYRIASERHQQLWDQYLALD
PERASRVRGLASQHAFLAAPHLELTVNLRYSTAIAWSLVEAARLPLPDQHDHLAQARVWRQVFQPHGRLHEF
IDAWQRCIGSLSQVA*
AnnotationID:4331GeneID:4325
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 20:08:09
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8651




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25794




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4325
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6645
                           PA1289_tr
                           translation of PA1289
                           159
                           99.99
                           99.99
                           0
                           837.0
     

     
     
178997
                           gb|AAG04678.1|AE004558_7
                           (AE004558) hypothetical protein PA1289 [Pseudomonas aeruginosa PAO1]
                           159
                           99.99
                           99.99
                           0
                           837.0
     

     
     
178998
                           gb|AAN67311.1|AE016357_4
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           160
                           68.75
                           76.25
                           1
                           559.0
     

     






      

          
GC ORFID: 47327How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1289Glimmer Score: 

          
Start: 720498Stop: 720019

          
Length: 480


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1289 translation of PA1289Homolog Bit Score 327.0

          
Other Homologs:  t_PA1289 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGTATTTCCGCCAACGATCTTTGCCAGCACGTGATACGCCCGACCCTGGACTACCTGTCCTGCCACAGC 
CCCGCCGCCGAAGCGCTGCTGCTGGGCGCGGCGGCCTGCCAGTCGGCGCTCGGGAGCGCCCTCGACGACCGC 
CGTGGCCACGGCCTGTACCGGATCGCCAGCGAACGCCACCAGCAGCTCTGGGACCAGTACCTGGCGCTGGAC 
CCGGAGCGCGCCAGCCGGGTCCGCGGCCTGGCCAGCCAGCATGCCTTCCTTGCCGCGCCGCACCTGGAACTG 
ACGGTGAACCTGCGCTACAGCACGGCCATCGCCTGGTCGCTGGTGGAAGCCGCGCGACTGCCGCTGCCCGAC 
CAGCACGATCACCTCGCCCAGGCTCGCGTGTGGCGCCAGGTATTCCAGCCGCACGGTCGCCTGCACGAGTTC 
ATCGACGCCTGGCAACGCTGCATCGGCAGCCTCAGCCAGGTCGCCTGA