ViewGene

Locus Name:
GeneID:
Location:

GeneID:4324
TrivialName: PA14_47350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47350
PAO1 Ortholog Locus:PA1305
Sequence Length:474
Protein Length:157
Start: 4217671
Stop: 4217198
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04694.1|AE004560_2 (AE004560) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/157 (100%), Positives = 157/157 (100%)
Sequence:
ATGAATGAACAAGACTATCTGATCGCCTGGGGCGCCTACGCCATCGCCGGACTCGGCCTGATGCTGGTGTTC
TGGCTGATGACCGGCTGGATGTGGCGCTGGCTGCGCGAACCCCTGCGGCTGATCGTCTTCATCCTGCTGTTC
ACGCCGACTCCGGTGGACCCGCAGAACGACCTCTACGCCCCGGCCATCGCCATCACCGCGCTGGACGTCGTG
TTCAAGGTCGGCAACAACGCCTGGCGCGCGGTCTCCGACCTGGCCCTGGTGGCGCTGCTGGGTTTCGGCCTG
TACCTGCTGATCGCCGCCATCCGCTGGCCGCTGGAGCGGGCCTGGAAGAATCGCCGGCATCCGTCGCAGGAT
GCCGAGGACGAGCCGACCCTGCGGCAGATGATGCAGCCCGAGTTGATGCCGGACGTCGACACCCGCACCGAC
GAGCACGGCGACCGGCGCATGCGCATCGAGCCGCGCCTGTAG
Translation:
MNEQDYLIAWGAYAIAGLGLMLVFWLMTGWMWRWLREPLRLIVFILLFTPTPVDPQNDLYAPAIAITALDVV
FKVGNNAWRAVSDLALVALLGFGLYLLIAAIRWPLERAWKNRRHPSQDAEDEPTLRQMMQPELMPDVDTRTD
EHGDRRMRIEPRL*
AnnotationID:4330GeneID:4324
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 21:09:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1305
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:8649
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25792
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4324

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6644 PA1305_tr translation of PA1305 157 99.99 99.99 0 839.0
178994 gb|AAG04694.1|AE004560_2 (AE004560) hypothetical protein PA1305 [Pseudomonas aeruginosa PAO1] 157 99.99 99.99 0 839.0
178995 gb|AAN70155.1|AE016654_12 (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440] 169 49.70 63.31 16 427.0
178996 gb|AAO57376.1| (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 169 49.70 63.90 23 410.0
GC ORFID: 47326How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1305Glimmer Score:
Start: 736238Stop: 736711
Length: 474
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1305 translation of PA1305Homolog Bit Score 327.0
Other Homologs: psyr_15may02_Scaffold10_revised_gene1741 (ORF: BLASTX 152.0), t_PA1305 (ORF: GLIMMER)
GC ORF Sequence
ATGAATGAACAAGACTATCTGATCGCCTGGGGCGCCTACGCCATCGCCGGACTCGGCCTGATGCTGGTGTTC
TGGCTGATGACCGGCTGGATGTGGCGCTGGCTGCGCGAACCCCTGCGGCTGATCGTCTTCATCCTGCTGTTC
ACGCCGACTCCGGTGGACCCGCAGAACGACCTCTACGCCCCGGCCATCGCCATCACCGCGCTGGACGTCGTG
TTCAAGGTCGGCAACAACGCCTGGCGCGCGGTCTCCGACCTGGCCCTGGTGGCGCTGCTGGGTTTCGGCCTG
TACCTGCTGATCGCCGCCATCCGCTGGCCGCTGGAGCGGGCCTGGAAGAATCGCCGGCATCCGTCGCAGGAT
GCCGAGGACGAGCCGACCCTGCGGCAGATGATGCAGCCCGAGTTGATGCCGGACGTCGACACCCGCACCGAC
GAGCACGGCGACCGGCGCATGCGCATCGAGCCGCGCCTGTAG