ViewGene
Locus Name:
GeneID:
Location:

GeneID:4323
TrivialName: PA14_59150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59150
PAO1 Ortholog Locus:
Sequence Length:471
Protein Length:156
Start: 5266303
Stop: 5266773
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84220.1| (AY273869) single strand DNA binding protein [Pseudomonas aeruginosa]
Identities = 155/156 (99%), Positives = 155/156 (99%)
Sequence:
ATGGCTACCCCCGTCTTCTGGGAAGGCAACATTGGCTCGGCGCCGGAGCACCGCAGCTTCCCCAACGGCAAC
AATCCCCCGCGGCAGTTGCTGCGACTGAACGTGATGTTCGACAACTCGATTCCCGATGGCCAAGGTGGCTAC
AAGGATCGCGGCGGCTTCTGGTGCAGCGTCGAATGGTGGCATCAGGATGCCCAGCGCTTCGCCGAACTGTTC
ACGAAAGGTATGCGCGTCAAGGTCGAAGGCAGGGCCATTATGGACCGCTGGCCGGACAAAGAGTCAGGCGAA
GAAGTCCAGGCGCTGAAGGTCGAAGCCTCGCGCATTTCCATCCTTCCGCATCGCCTGGCCGAGGTCACCCTG
TTGCCAACCCAGCATCAACAGTCTCGGAACGTCCCGCAGCAACCTGCTCAGCAAGATGCGCAATCGCAGCAG
GACTACGACAGCGCCTTCGACGACGACATCCCCATGTAG
Translation:
MATPVFWEGNIGSAPEHRSFPNGNNPPRQLLRLNVMFDNSIPDGQGGYKDRGGFWCSVEWWHQDAQRFAELF
TKGMRVKVEGRAIMDRWPDKESGEEVQALKVEASRISILPHRLAEVTLLPTQHQQSRNVPQQPAQQDAQSQQ
DYDSAFDDDIPM*
AnnotationID:4329GeneID:4323
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 18:06:58
Gene Name:
Confidence Code:3
GeneProduct:putative single-stranded DNA binding protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0629
Secondary Functional Category(ies):nucleotide biosynthesis and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF84586.1|AE004000_3 (AE004000) single-stranded DNA binding protein [Xylella fastidiosa
           9a5c]
          Length = 150

 Score =  134 bits (337), Expect = 2e-31
 Identities = 68/141 (48%), Positives = 90/141 (63%), Gaps = 3/141 (2%)








 
Structural Features:
COG0629, Ssb, Single-stranded DNA-binding protein 
[DNA replication, recombination, and repair]
CD-Length = 167 residues,  98.8% aligned
Score = 69.3 bits (169), Expect = 2e-13
Identities = 44/170 (25%), Positives = 59/170 (34%), Gaps = 20/170 (11%)






   
Genomic Context:






   
Comment:
Similar to ssb (PA4232 and PA14_09200).


















    ReferenceID:8647




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25790




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38320




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4323_cdd.html


    		




 
URL:

















    ReferenceID:38321




  
Author/Investigator(s):
        Genschel J, Litz L, Thole H, Roemling U, Urbanke C.





  
Title:
        Isolation, sequencing and overproduction of the single-stranded DNA binding protein from Pseudomonas aeruginosa PAO.




  
PubMed:
        8982079


MedLine:
        




    
Source:
Gene. 1996 Dec 5;182(1-2):137-43.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8982079&query_hl=12&itool=pubmed_docsum









           
Homologs By Global Alignment 

           

       



     
Gene ID:4323
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
178988
                           gb|AAP84220.1|
                           (AY273869) single strand DNA binding protein [Pseudomonas aeruginosa]
                           156
                           99.35
                           99.35
                           0
                           840.0
     

     
     
178989
                           gb|AAN62318.1|AF440524_105
                           (AF440524) putative single-stranded DNA binding protein [Pseudomonas aeruginosa]
                           156
                           45.51
                           58.97
                           25
                           367.0
     

     
     
178990
                           gb|AAN62195.1|AF440523_102
                           (AF440523) putative single-stranded DNA binding protein [Pseudomonas aeruginosa]
                           156
                           43.58
                           57.05
                           10
                           336.0
     

     
     
178991
                           gb|AAF84586.1|AE004000_3
                           (AE004000) single-stranded DNA binding protein [Xylella fastidiosa 9a5c]
                           158
                           42.40
                           58.22
                           10
                           333.0
     

     
     
178993
                           emb|CAE92948.1|
                           (AJ617740) putative single-stranded DNA binding protein [Pseudomonas putida]
                           158
                           41.13
                           56.32
                           14
                           321.0
     

     






      

          
GC ORFID: 47325How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL095Glimmer Score: 

          
Start: 4529982Stop: 4530452

          
Length: 471


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RL095 ssb 156 Homolog: XF1778 / Single-stranded DNA binding protein; DNA replication / X.fastidiosa / 9a5c (AAF84586) translation of RL095Homolog Bit Score 328.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1578 (ORF: BLASTX 176.0), t_RL095 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTACCCCCGTCTTCTGGGAAGGCAACATTGGCTCGGCGCCGGAGCACCGCAGCTTCCCCAACGGCAAC 
AATCCCCCGCGGCAGTTGCTGCGACTGAACGTGATGTTCGACAACTCGATTCCCGATGGCCAAGGTGGCTAC 
AAGGATCGCGGCGGCTTCTGGTGCAGCGTCGAATGGTGGCATCAGGATGCCCAGCGCTTCGCCGAACTGTTC 
ACGAAAGGTATGCGCGTCAAGGTCGAAGGCAGGGCCATTATGGACCGCTGGCCGGACAAAGAGTCAGGCGAA 
GAAGTCCAGGCGCTGAAGGTCGAAGCCTCGCGCATTTCCATCCTTCCGCATCGCCTGGCCGAGGTCACCCTG 
TTGCCAACCCAGCATCAACAGTCTCGGAACGTCCCGCAGCAACCTGCTCAGCAAGATGCGCAATCGCAGCAG 
GACTACGACAGCGCCTTCGACGACGACATCCCCATGTAG