ViewGene
Locus Name:
GeneID:
Location:

GeneID:4321
TrivialName: PA14_69390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69390
PAO1 Ortholog Locus:PA5255
Sequence Length:483
Protein Length:160
Start: 6189613
Stop: 6189131
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08640.1|AE004938_2 (AE004938) Alginate regulatory protein AlgQ [Pseudomonas aeruginosa PAO1]
Identities = 160/160 (100%), Positives = 160/160 (100%)
Sequence:
ATGCTCGAAAGCTGCCGTAATGCCCAAGAGCGGTGGGGGGGCGTGCACCAACTGATCGATCGCTGGCTGCAT
GAGCGCCAGCAACTGGTGCAGGCCTTCGATGCCCTGAGCGGTATTCAGGCACCGGCGCCCAACGCCGAAGAA
CTCCAGCATTTTTGCCAATTGCTGCTGGACTACGTATCTGCCGGACACTTCGAGGTCTACGAGCAACTGACG
GCGGAAGGCAAGGCCTTCGGCGATCAGCGCGGCCTGGAGCTGGCCAAGCAGATCTTCCCCCGGCTGGAAGCC
ATCACCGAATCCGCGCTGAACTTCAACGATCGCTGCGACAACGGCGATTGCCGTGAAGGAGCCTGCCTCATC
GCGGAGCTGAAGGTCCTGCGGCAACAGTTGCACGAACGCTTCGAGCTGGAGGACTGCCTCATCGAAGTCCTG
CACAACGCCCACAGCCAGAGCGGCGCAGAGGGTTCGGCAGTACCGGTCTGA
Translation:
MLESCRNAQERWGGVHQLIDRWLHERQQLVQAFDALSGIQAPAPNAEELQHFCQLLLDYVSAGHFEVYEQLT
AEGKAFGDQRGLELAKQIFPRLEAITESALNFNDRCDNGDCREGACLIAELKVLRQQLHERFELEDCLIEVL
HNAHSQSGAEGSAVPV*
AnnotationID:4327GeneID:4321
AnnotatorUID: diggins
Modification Date/Time: 2004-10-18 12:12:45
Gene Name:algQ
Confidence Code:1
GeneProduct:alginate regulatory protein AlgQ
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53688.1| (AE016856) transcriptional regulator AlgQ [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 157

 Score =  199 bits (507), Expect = 4e-51
 Identities = 97/154 (62%), Positives = 118/154 (76%), Gaps = 1/154 (0%)

>gb|AAN65824.1|AE016211_2 (AE016774) transcriptional regulator PfrA [Pseudomonas putida
           KT2440]
          Length = 156

 Score =  184 bits (468), Expect = 1e-46
 Identities = 90/153 (58%), Positives = 112/153 (73%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8643




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25786




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35730




  
Author/Investigator(s):
        Konyecsni WM, Deretic V.





  
Title:
        DNA sequence and expression analysis of algP and algQ, components of the multigene system transcriptionally regulating mucoidy in Pseudomonas aeruginosa: algP contains multiple direct repeats.




  
PubMed:
        2110144


MedLine:
        




    
Source:
J Bacteriol. 1990 May;172(5):2511-20.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2110144









           
Homologs By Global Alignment 

           

       



     
Gene ID:4321
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6642
                           PA5255_tr
                           translation of PA5255
                           160
                           99.99
                           99.99
                           0
                           842.0
     

     
     
178972
                           gb|AAG08640.1|AE004938_2
                           (AE004938) Alginate regulatory protein AlgQ [Pseudomonas aeruginosa PAO1]
                           160
                           99.99
                           99.99
                           0
                           842.0
     

     
     
178973
                           gb|AAA72066.1|
                           (M32077) alginate regulatory protein Q [Pseudomonas aeruginosa]
                           160
                           99.99
                           99.99
                           0
                           842.0
     

     
     
178974
                           gb|AAA25723.1|
                           (M30145) alginate regulatory protein AlgR2 [Pseudomonas aeruginosa]
                           160
                           99.99
                           99.99
                           0
                           842.0
     

     
     
178975
                           gb|AAO53688.1|
                           (AE016856) transcriptional regulator AlgQ [Pseudomonas syringae pv. tomato str. DC3000]
                           161
                           60.24
                           73.29
                           5
                           504.0
     

     






      

          
GC ORFID: 47323How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5255Glimmer Score: 

          
Start: 5453300Stop: 5452818

          
Length: 483


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5255 translation of PA5255Homolog Bit Score 328.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4072 (ORF: BLASTX 202.0), t_PA5255 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCGAAAGCTGCCGTAATGCCCAAGAGCGGTGGGGGGGCGTGCACCAACTGATCGATCGCTGGCTGCAT 
GAGCGCCAGCAACTGGTGCAGGCCTTCGATGCCCTGAGCGGTATTCAGGCACCGGCGCCCAACGCCGAAGAA 
CTCCAGCATTTTTGCCAATTGCTGCTGGACTACGTATCTGCCGGACACTTCGAGGTCTACGAGCAACTGACG 
GCGGAAGGCAAGGCCTTCGGCGATCAGCGCGGCCTGGAGCTGGCCAAGCAGATCTTCCCCCGGCTGGAAGCC 
ATCACCGAATCCGCGCTGAACTTCAACGATCGCTGCGACAACGGCGATTGCCGTGAAGGAGCCTGCCTCATC 
GCGGAGCTGAAGGTCCTGCGGCAACAGTTGCACGAACGCTTCGAGCTGGAGGACTGCCTCATCGAAGTCCTG 
CACAACGCCCACAGCCAGAGCGGCGCAGAGGGTTCGGCAGTACCGGTCTGA