ViewGene

Locus Name:
GeneID:
Location:

GeneID:4320
TrivialName: PA14_67120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67120
PAO1 Ortholog Locus:PA5081
Sequence Length:477
Protein Length:158
Start: 5991853
Stop: 5992329
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08466.1|AE004921_3 (AE004921) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 158/158 (100%), Positives = 158/158 (100%)
Sequence:
ATGGCCGAGGCCTTGCGACACCGTATCCGCGCCGCCGGCCTGCTGGTGGTGGAGCAACGCATTCTGCTGGTC
CGCCACGAGGTCGGCGGCGACATCTACTGGATTCCGCCCGGCGGCGGCTTCGAGTCGGAATGCGACGAATCG
ACGAAGGATACCGTCCGGCGCGAGTTTTTCGAGGAGACCGGCCTGCGGGTGGACGTCGGCCCGCTGGTCTAC
GTGCGCGAATTCGCCGAACCCGCCGCCGGGCGCTTCCACATGGAGCTGTTCTACCGCATCGACGCCTGGCGT
GGCGAGCCGACCCTGGCCAACCTGAAGGGCCTGGGCGGCGACGAGTTCGATATCCGCGAGGTCGGCTGGATC
GCCCGCGACGAACTGCCTGGCCTGCCGTCTTTCTATCCGGCCGAACTGGCCGACGACGTCTGGTCGCGCCTG
GACGCGCCGACGCCGTCGATCCGCCACCTCGGCTTGCAGCGCTAG
Translation:
MAEALRHRIRAAGLLVVEQRILLVRHEVGGDIYWIPPGGGFESECDESTKDTVRREFFEETGLRVDVGPLVY
VREFAEPAAGRFHMELFYRIDAWRGEPTLANLKGLGGDEFDIREVGWIARDELPGLPSFYPAELADDVWSRL
DAPTPSIRHLGLQR*
AnnotationID:4326GeneID:4320
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 06:06:38
Gene Name:
Confidence Code:3
GeneProduct:putative pyrophosphatase
Cell Localization:()
Synonyms:PA5081
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1051
Secondary Functional Category(ies):nucleotide biosynthesis and metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
CD-Length = 145 residues,  99.3% aligned
Score = 78.5 bits (193), Expect = 4e-16
Identities = 55/153 (35%), Positives = 65/153 (42%), Gaps = 11/153 (7%)

Genomic Context:
Comment:
ReferenceID:8641
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25784
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34980
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4320_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4320

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6641 PA5081_tr translation of PA5081 158 99.99 99.99 0 840.0
178971 gb|AAG08466.1|AE004921_3 (AE004921) hypothetical protein PA5081 [Pseudomonas aeruginosa PAO1] 158 99.99 99.99 0 840.0
GC ORFID: 47322How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5081Glimmer Score:
Start: 5255538Stop: 5256014
Length: 477
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA5081 translation of PA5081Homolog Bit Score 328.0
Other Homologs: t_PA5081 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCGAGGCCTTGCGACACCGTATCCGCGCCGCCGGCCTGCTGGTGGTGGAGCAACGCATTCTGCTGGTC
CGCCACGAGGTCGGCGGCGACATCTACTGGATTCCGCCCGGCGGCGGCTTCGAGTCGGAATGCGACGAATCG
ACGAAGGATACCGTCCGGCGCGAGTTTTTCGAGGAGACCGGCCTGCGGGTGGACGTCGGCCCGCTGGTCTAC
GTGCGCGAATTCGCCGAACCCGCCGCCGGGCGCTTCCACATGGAGCTGTTCTACCGCATCGACGCCTGGCGT
GGCGAGCCGACCCTGGCCAACCTGAAGGGCCTGGGCGGCGACGAGTTCGATATCCGCGAGGTCGGCTGGATC
GCCCGCGACGAACTGCCTGGCCTGCCGTCTTTCTATCCGGCCGAACTGGCCGACGACGTCTGGTCGCGCCTG
GACGCGCCGACGCCGTCGATCCGCCACCTCGGCTTGCAGCGCTAG